Mercurial > repos > iuc > customize_metaphlan_database

annotate test-data/test_database_versioned.loc.test @ 12:25a5fa5f86a5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 8ab597f47a3a12919b55055380b6e725879cc5c0
author iuc
date Sun, 08 Sep 2024 06:59:54 +0000
parents a755466eb47c
children
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a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
1 # Tab separated with 5 columns:
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
3 # - name (Galaxy shows this in the UI)
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
4 # - dbkey
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
5 # - path (folder name containing the Kraken DB)
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
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6 # - db version (whether it is SGB of Metaphlan v4 or not)
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
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7 test-db-20210409 "Test Database" test-db ${__HERE__}/test-db SGB
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
8 # the TOY DB should be called in tests with the hidden test parameter enables this will make Metaphlan
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
9 # download the data to the JWD
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
10 mpa_vJan21_TOY_CHOCOPhlAnSGB mpa_vJan21_TOY_CHOCOPhlAnSGB mpa_vJan21_TOY_CHOCOPhlAnSGB_202103 ./ SGB
a755466eb47c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05
iuc
parents:
diff changeset
11 # mpa_vJun23_CHOCOPhlAnSGB_202403 mpa_vJun23_CHOCOPhlAnSGB_202403 mpa_vJun23_CHOCOPhlAnSGB_202403 ${__HERE__}/mpa_vJun23_CHOCOPhlAnSGB_202403/ SGB