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changeset 1:23d7e75d850e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutesv commit 1221a5ddb00b62d789a6df44fae6a876f5cade37
author iuc
date Sat, 05 Oct 2024 16:42:23 +0000
parents c0f8fe52948e
children cb441f258c37
files cutesv.xml macros.xml
diffstat 2 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/cutesv.xml	Thu Sep 24 15:11:57 2020 +0000
+++ b/cutesv.xml	Sat Oct 05 16:42:23 2024 +0000
@@ -1,8 +1,11 @@
-<tool id="cutesv" name="cuteSV" version="@WRAPPER_VERSION@">
+<tool id="cutesv" name="cuteSV" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.1">
     <description>detects long-read-based SVs</description>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <xrefs>
+        <xref type="bio.tools">cuteSV</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">cutesv</requirement>
         <requirement type="package" version="1.10">samtools</requirement>
@@ -100,7 +103,7 @@
                 <param name="ref_selector" value="history"/>
                 <param name="ref" ftype="fasta" value="genome.fasta" />
             </conditional>
-            <param name="seq_method" value="pb_ccs" />
+            <param name="sel_method|meth_selector" value="pb_ccs" />
             <param name="input_sample_file" ftype="bam" value="sample.bam" />
             <output name="out_sample">
                 <assert_contents>
@@ -114,7 +117,7 @@
                 <param name="ref_selector" value="cached"/>
                 <param name="ref" value="test_buildid"/>
             </conditional>
-            <param name="seq_method" value="pb_ccs" />
+            <param name="sel_method|meth_selector" value="pb_ccs" />
             <param name="input_sample_file" ftype="bam" value="sample.bam" />
             <output name="out_sample">
                 <assert_contents>
--- a/macros.xml	Thu Sep 24 15:11:57 2020 +0000
+++ b/macros.xml	Sat Oct 05 16:42:23 2024 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@TOOL_VERSION@">1.0.8</token>
     <xml name="reference_interface">
         <conditional name="reference_source">