Mercurial > repos > iuc > dada2_learnerrors

comparison dada2_learnErrors.xml @ 3:afdfa35a89d9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit 8533fe71d1d50f09348da2dc34941724407a1ffe"
author iuc
date Tue, 14 Jul 2020 07:38:24 -0400
parents c48d42d65d2b
children 0776d824d896
comparison
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2:c48d42d65d2b 3:afdfa35a89d9
57 </outputs> 57 </outputs>
58 <tests> 58 <tests>
59 <test> 59 <test>
60 <param name="fls" value="filterAndTrim_F3D0_R1.fq.gz,filterAndTrim_F3D141_R1.fq.gz" ftype="fastqsanger.gz"/> 60 <param name="fls" value="filterAndTrim_F3D0_R1.fq.gz,filterAndTrim_F3D141_R1.fq.gz" ftype="fastqsanger.gz"/>
61 <output name="errors" value="learnErrors_R1.Rdata" ftype="dada2_errorrates" compare="sim_size" delta="7000"/> 61 <output name="errors" value="learnErrors_R1.Rdata" ftype="dada2_errorrates" compare="sim_size" delta="7000"/>
62 <output name="plot" value="learnErrors_R1.pdf" ftype="pdf" compare="sim_size" delta="5000" /> 62 <output name="plot" ftype="pdf">
63 <assert_contents>
64 <has_text text="%PDF"/>
65 <has_text text="%%EOF"/>
66 </assert_contents>
67 </output>
63 </test> 68 </test>
64 <!-- test w non-default parameters --> 69 <!-- test w non-default parameters -->
65 <test> 70 <test>
66 <param name="fls" value="filterAndTrim_F3D0_R1.fq.gz,filterAndTrim_F3D141_R1.fq.gz" ftype="fastqsanger.gz"/> 71 <param name="fls" value="filterAndTrim_F3D0_R1.fq.gz,filterAndTrim_F3D141_R1.fq.gz" ftype="fastqsanger.gz"/>
67 <param name="nbases" value="6" /> 72 <param name="nbases" value="6" />
72 <param name="plotopt|obs" value="FALSE" /> 77 <param name="plotopt|obs" value="FALSE" />
73 <param name="plotopt|err_out" value="FALSE" /> 78 <param name="plotopt|err_out" value="FALSE" />
74 <param name="plotopt|err_in" value="TRUE" /> 79 <param name="plotopt|err_in" value="TRUE" />
75 <param name="plotopt|nominalQ" value="FALSE"/> 80 <param name="plotopt|nominalQ" value="FALSE"/>
76 <output name="errors" value="learnErrors_R1.Rdata" ftype="dada2_errorrates" compare="sim_size" delta="13000"/> 81 <output name="errors" value="learnErrors_R1.Rdata" ftype="dada2_errorrates" compare="sim_size" delta="13000"/>
77 <output name="plot" value="learnErrors_R1.pdf" ftype="pdf" compare="sim_size" delta="5000" /> 82 <output name="plot" ftype="pdf">
83 <assert_contents>
84 <has_text text="%PDF"/>
85 <has_text text="%%EOF"/>
86 </assert_contents>
87 </output>
78 </test> 88 </test>
79 </tests> 89 </tests>
80 <help><![CDATA[ 90 <help><![CDATA[
81 Description 91 Description
82 ........... 92 ...........