Mercurial > repos > iuc > dada2_mergepairs

comparison dada2_mergePairs.xml @ 2:69900ffd3b8e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit f2a33fe115fef9d711112b53136cf7619f1b19be"
author iuc
date Mon, 16 Mar 2020 08:22:08 -0400
parents b1e55c248f17
children 84743da21318
comparison
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1:b1e55c248f17 2:69900ffd3b8e
38 <outputs> 38 <outputs>
39 <data name="merged" format="dada2_mergepairs" label="${tool.name} on ${on_string}"/> 39 <data name="merged" format="dada2_mergepairs" label="${tool.name} on ${on_string}"/>
40 </outputs> 40 </outputs>
41 <tests> 41 <tests>
42 <test> 42 <test>
43 <param name="dadaF" ftype="dada2_dada" value="dada_F3D0_R1.Rdata"/> 43 <param name="dadaF" ftype="dada2_dada" value="dada_F3D0_S188_L001_R1.Rdata"/>
44 <param name="derepF" ftype="fastq.gz" value="filterAndTrim_F3D0_R1.fq.gz"/> 44 <param name="derepF" ftype="fastq.gz" value="filterAndTrim_F3D0_R1.fq.gz"/>
45 <param name="dadaR" ftype="dada2_dada" value="dada_F3D0_R2.Rdata"/> 45 <param name="dadaR" ftype="dada2_dada" value="dada_F3D0_S188_L001_R2.Rdata"/>
46 <param name="derepR" ftype="fastq.gz" value="filterAndTrim_F3D0_R2.fq.gz"/> 46 <param name="derepR" ftype="fastq.gz" value="filterAndTrim_F3D0_R2.fq.gz"/>
47 <output name="merged" value="mergePairs_F3D0.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="400" /> 47 <output name="merged" value="mergePairs_F3D0_S188_L001.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="400" />
48 </test> 48 </test>
49 <!-- test non-default options --> 49 <!-- test non-default options -->
50 <test> 50 <test>
51 <param name="dadaF" ftype="dada2_dada" value="dada_F3D0_R1.Rdata"/> 51 <param name="dadaF" ftype="dada2_dada" value="dada_F3D0_S188_L001_R1.Rdata"/>
52 <param name="derepF" ftype="fastq.gz" value="filterAndTrim_F3D0_R1.fq.gz"/> 52 <param name="derepF" ftype="fastq.gz" value="filterAndTrim_F3D0_R1.fq.gz"/>
53 <param name="dadaR" ftype="dada2_dada" value="dada_F3D0_R2.Rdata"/> 53 <param name="dadaR" ftype="dada2_dada" value="dada_F3D0_S188_L001_R2.Rdata"/>
54 <param name="derepR" ftype="fastq.gz" value="filterAndTrim_F3D0_R2.fq.gz"/> 54 <param name="derepR" ftype="fastq.gz" value="filterAndTrim_F3D0_R2.fq.gz"/>
55 <output name="merged" value="mergePairs_F3D0_nondefault.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="700"/> 55 <output name="merged" value="mergePairs_F3D0_S188_L001_nondefault.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="700"/>
56 <param name="minOverlap" value="8" /> 56 <param name="minOverlap" value="8" />
57 <param name="maxMismatch" value="1"/> 57 <param name="maxMismatch" value="1"/>
58 <param name="justConcatenate" value="TRUE" /> 58 <param name="justConcatenate" value="TRUE" />
59 <param name="trimOverhang" value="TRUE" /> 59 <param name="trimOverhang" value="TRUE" />
60 </test> 60 </test>