Mercurial > repos > iuc > data_manager_bowtie_index_builder
diff data_manager/bowtie_index_builder.py @ 4:86e9af693a33 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 67d76bc24ec6a5eb145f05416dc2098999897bae
| author | iuc |
|---|---|
| date | Fri, 09 Jun 2017 06:12:02 -0400 |
| parents | ea5faedd0795 |
| children | 08a3583826fa |
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--- a/data_manager/bowtie_index_builder.py Tue Apr 04 18:06:27 2017 -0400 +++ b/data_manager/bowtie_index_builder.py Fri Jun 09 06:12:02 2017 -0400 @@ -1,4 +1,6 @@ #!/usr/bin/env python +from __future__ import print_function + import json import optparse import os @@ -42,7 +44,7 @@ if return_code: tmp_stderr.flush() tmp_stderr.seek(0) - print >> sys.stderr, "Error building index:" + print("Error building index:", file=sys.stderr) while True: chunk = tmp_stderr.read( CHUNK_SIZE ) if not chunk: @@ -62,7 +64,6 @@ def main(): - # Parse Command Line parser = optparse.OptionParser() parser.add_option( '-f', '--fasta_filename', dest='fasta_filename', action='store', type="string", default=None, help='fasta_filename' ) parser.add_option( '-d', '--fasta_dbkey', dest='fasta_dbkey', action='store', type="string", default=None, help='fasta_dbkey' )