Mercurial > repos > iuc > data_manager_build_kraken2_database

comparison data_manager/kraken2_build_database.xml @ 2:edacc4bcd3cb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 1c0a28222ac235e77b2a792c1ebca027a746c220"
author iuc
date Sun, 22 Dec 2019 11:57:46 -0500
parents 6ba1ec5f86fc
children 0eebe086fd58
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1:6ba1ec5f86fc 2:edacc4bcd3cb
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="kraken2_build_database" name="Kraken2" tool_type="manage_data" version="2.0.8_beta+galaxy1"> 2 <tool id="kraken2_build_database" name="Kraken2" tool_type="manage_data" version="2.0.8_beta+galaxy2" profile="18.09">
3 <macros> 3 <macros>
4 <xml name="common_params"> 4 <xml name="common_params">
5 <param name="kmer_len" type="integer" value="35" label="K-mer length in BP" /> 5 <param name="kmer_len" type="integer" value="35" label="K-mer length in BP" />
6 <param name="minimizer_len" type="integer" value="31" label="Minimizer length" /> 6 <param name="minimizer_len" type="integer" value="31" label="Minimizer length" />
7 <param name="minimizer_spaces" type="integer" value="6" label="Minimizer spaces" /> 7 <param name="minimizer_spaces" type="integer" value="6" label="Minimizer spaces" />
9 </xml> 9 </xml>
10 </macros> 10 </macros>
11 <description>database builder</description> 11 <description>database builder</description>
12 <requirements> 12 <requirements>
13 <requirement type="package" version="2.0.8_beta">kraken2</requirement> 13 <requirement type="package" version="2.0.8_beta">kraken2</requirement>
14 <requirement type="package" version="3.7">python</requirement>
14 </requirements> 15 </requirements>
15 <version_command>kraken2 -version | head -n 1 | awk '{print $NF}'</version_command> 16 <version_command>kraken2 -version | head -n 1 | awk '{print $NF}'</version_command>
16 <command detect_errors="exit_code"> 17 <command detect_errors="exit_code">
17 <![CDATA[ 18 <![CDATA[
18 python '$__tool_directory__/kraken2_build_database.py' 19 python '$__tool_directory__/kraken2_build_database.py'