Mercurial > repos > iuc > data_manager_build_kraken2_database
changeset 2:edacc4bcd3cb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 1c0a28222ac235e77b2a792c1ebca027a746c220"
| author | iuc |
|---|---|
| date | Sun, 22 Dec 2019 11:57:46 -0500 |
| parents | 6ba1ec5f86fc |
| children | 19b6a2f0dbe2 |
| files | data_manager/kraken2_build_database.py data_manager/kraken2_build_database.xml test-data/kraken2_custom_data_manager.json |
| diffstat | 3 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/kraken2_build_database.py Sat Aug 03 05:31:12 2019 -0400 +++ b/data_manager/kraken2_build_database.py Sun Dec 22 11:57:46 2019 -0500 @@ -354,7 +354,7 @@ else: sys.exit("Invalid database type") - open(args.data_manager_json, 'w').write(json.dumps(data_manager_output)) + open(args.data_manager_json, 'w').write(json.dumps(data_manager_output, sort_keys=True)) if __name__ == "__main__":
--- a/data_manager/kraken2_build_database.xml Sat Aug 03 05:31:12 2019 -0400 +++ b/data_manager/kraken2_build_database.xml Sun Dec 22 11:57:46 2019 -0500 @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="kraken2_build_database" name="Kraken2" tool_type="manage_data" version="2.0.8_beta+galaxy1"> +<tool id="kraken2_build_database" name="Kraken2" tool_type="manage_data" version="2.0.8_beta+galaxy2" profile="18.09"> <macros> <xml name="common_params"> <param name="kmer_len" type="integer" value="35" label="K-mer length in BP" /> @@ -11,6 +11,7 @@ <description>database builder</description> <requirements> <requirement type="package" version="2.0.8_beta">kraken2</requirement> + <requirement type="package" version="3.7">python</requirement> </requirements> <version_command>kraken2 -version | head -n 1 | awk '{print $NF}'</version_command> <command detect_errors="exit_code">
--- a/test-data/kraken2_custom_data_manager.json Sat Aug 03 05:31:12 2019 -0400 +++ b/test-data/kraken2_custom_data_manager.json Sun Dec 22 11:57:46 2019 -0500 @@ -1,1 +1,1 @@ -{"data_tables": {"kraken2_databases": [{"path": "database", "name": "database", "value": "database"}]}} \ No newline at end of file +{"data_tables": {"kraken2_databases": [{"name": "database", "path": "database", "value": "database"}]}} \ No newline at end of file