Mercurial > repos > iuc > data_manager_bwa_mem2_index_builder

annotate data_manager_conf.xml @ 2:a89d803c8b29 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit e5971e34b23280f7c3d6291a03325b6dd47e3fdd
author iuc
date Sat, 16 Aug 2025 14:35:47 +0000
parents 62d6a9024b3c
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
2 <data_managers>
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
3 <data_manager tool_file="data_manager/bwa_mem2_index_builder.xml" id="bwa_mem2_index_builder">
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
4 <data_table name="bwa_mem2_indexes">
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
5 <output>
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
6 <column name="value" />
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
7 <column name="dbkey" />
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
8 <column name="name" />
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
9 <column name="path" output_ref="out_file" >
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
10 <move type="directory" relativize_symlinks="True">
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
1
62d6a9024b3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
parents: 0
diff changeset
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/bwa_mem_index/v2/${value}</target>
0
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
13 </move>
1
62d6a9024b3c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
parents: 0
diff changeset
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/bwa_mem_index/v2/${value}/${path}</value_translation>
0
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
16 </column>
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
17 </output>
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
18 </data_table>
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
19 </data_manager>
29e2285e3ae0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
20 </data_managers>