Mercurial > repos > iuc > data_manager_bwa_mem2_index_builder

changeset 2:a89d803c8b29 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit e5971e34b23280f7c3d6291a03325b6dd47e3fdd
author iuc
date Sat, 16 Aug 2025 14:35:47 +0000
parents 62d6a9024b3c
children
files data_manager/bwa_mem2_index_builder.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/bwa_mem2_index_builder.xml	Thu Dec 05 06:49:08 2024 +0000
+++ b/data_manager/bwa_mem2_index_builder.xml	Sat Aug 16 14:35:47 2025 +0000
@@ -2,7 +2,7 @@
     <description></description>
     <macros>
         <token name="@TOOL_VERSION@">2.2.1</token>
-        <token name="@VERSION_SUFFIX@">1</token>
+        <token name="@VERSION_SUFFIX@">2</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">bwa-mem2</requirement>
@@ -12,6 +12,7 @@
         mkdir -p '${out_file.extra_files_path}' &&
         ln -s '${all_fasta_source.fields.path}' '${out_file.extra_files_path}/${fasta_file_name}' &&
         bwa-mem2 index '${out_file.extra_files_path}/${fasta_file_name}' &&
+        rm '${out_file.extra_files_path}/${fasta_file_name}' &&
         cp '$dmjson' '$out_file'
         ]]>
     </command>