Mercurial > repos > iuc > data_manager_dada2

annotate data_manager/dada2_fetcher.xml @ 3:c29275496061 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit 8533fe71d1d50f09348da2dc34941724407a1ffe"
author iuc
date Tue, 14 Jul 2020 07:37:09 -0400
parents a6a81f921701
children 48a42ca61006
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f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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diff changeset
1 <?xml version="1.0"?>
3
c29275496061 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit 8533fe71d1d50f09348da2dc34941724407a1ffe"
iuc
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2 <tool id="dada2_fetcher" name="dada2 data manager" tool_type="manage_data" version="0.0.7">
1
bf7b2c14cabc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit a82e4981dac025c909244acd7127c215bdb519a7"
iuc
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3 <requirements>
bf7b2c14cabc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit a82e4981dac025c909244acd7127c215bdb519a7"
iuc
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4 <requirement type="package" version="3.7">python</requirement>
bf7b2c14cabc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit a82e4981dac025c909244acd7127c215bdb519a7"
iuc
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5 </requirements>
3
c29275496061 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit 8533fe71d1d50f09348da2dc34941724407a1ffe"
iuc
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6 <description>Download reference databases</description>
0
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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7 <command detect_errors="exit_code"><![CDATA[
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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8 python '$__tool_directory__/data_manager.py'
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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9 --out '$out_file'
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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10 #set dataset = str($db_cond.db_select) + '_' + str($db_cond.version_select)
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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11 --dataset '$dataset'
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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12 ]]>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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13 </command>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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14 <inputs>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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15 <conditional name="db_cond">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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16 <param name="db_select" type="select" label="Taxonomic database">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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17 <option value="silva">Silva</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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18 <option value="rdp">RDP</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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19 <option value="greengenes">GreenGenes</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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20 <option value="unite">UNITE Fungi: General Fasta</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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21 <!-- UNITE Eukaryotes not yet supported https://github.com/benjjneb/dada2/issues/702 -->
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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22 <option value="RefSeq_RDP">NCBI RefSeq 16S rRNA database supplemented by RDP</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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23 <option value="gtdb">GTDB: Genome Taxonomy Database (Bacteria &amp; Archaea)</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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24 <option value="hitdb">HitDB (Human InTestinal 16S)</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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25 <option value="silva_euk_18S">Silva Eukaryotic 18S</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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26 <option value="PR2">Protist Ribosomal Reference database (PR2)</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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27 </param>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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28 <when value="silva">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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29 <param name="version_select" type="select" label="Database version">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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30 <option value="132">132</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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31 <option value="128">128</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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32 </param>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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33 </when>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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34 <when value="rdp">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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35 <param name="version_select" type="select" label="Database version">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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36 <option value="16">16</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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37 <option value="14">14</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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38 </param>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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39 </when>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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40 <when value="greengenes">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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41 <param name="version_select" type="select" label="Database version">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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42 <option value="13.84">13.84</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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43 </param>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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44 </when>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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45 <when value="unite">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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46 <param name="version_select" type="select" label="Database version">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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47 <option value="8.0_fungi">release 8.0 for Fungi</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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48 <option value="8.0_fungi_singletons">release 8.0 for Fungi including global and 97% singletons</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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49 </param>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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50 </when>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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51 <when value="RefSeq_RDP">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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52 <param name="version_select" type="select" label="Database version">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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53 <option value="2018_05">05/2018</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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54 </param>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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55 </when>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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56 <when value="gtdb">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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57 <param name="version_select" type="select" label="Database version">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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58 <option value="2018_11">11/2018</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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59 </param>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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60 </when>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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61 <when value="hitdb">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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62 <param name="version_select" type="select" label="Database version">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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63 <option value="1">1</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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64 </param>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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65 </when>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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66 <when value="silva_euk_18S">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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67 <param name="version_select" type="select" label="Database version">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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68 <option value="132">132</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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69 </param>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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70 </when>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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71 <when value="PR2">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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72 <param name="version_select" type="select" label="Database version">
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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73 <option value="4.11.1">4.11.1</option>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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74 </param>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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75 </when>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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76 </conditional>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
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77 </inputs>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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78 <outputs>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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diff changeset
79 <data name="out_file" format="data_manager_json" />
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
80 </outputs>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
81 <tests>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
82 <test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
83 <param name="db_cond|db_select" value="silva"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
84 <param name="db_cond|version_select" value="132"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
85 <output name="out_file" file="silva132_json"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
86 </test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
87 <test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
88 <param name="db_cond|db_select" value="rdp"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
89 <param name="db_cond|version_select" value="16"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
90 <output name="out_file" file="rdp16_json"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
91 </test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
92 <test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
93 <param name="db_cond|db_select" value="greengenes"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
94 <param name="db_cond|version_select" value="13.84"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
95 <output name="out_file" file="greengenes13.84_json"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
96 </test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
97 <test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
98 <param name="db_cond|db_select" value="unite"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
99 <param name="db_cond|version_select" value="8.0_fungi"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
100 <output name="out_file" file="unite8fungi_json"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
101 </test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
102 <test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
103 <param name="db_cond|db_select" value="unite"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
104 <param name="db_cond|version_select" value="8.0_fungi_singletons"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
105 <output name="out_file" file="unite8fungisingletons_json"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
106 </test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
107 <test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
108 <param name="db_cond|db_select" value="RefSeq_RDP"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
109 <param name="db_cond|version_select" value="2018_05"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
110 <output name="out_file" file="RefSeq_RDP2018_json"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
111 </test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
112 <test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
113 <param name="db_cond|db_select" value="gtdb"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
114 <param name="db_cond|version_select" value="2018_11"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
115 <output name="out_file" file="gtdb2018_json"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
116 </test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
117 <test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
118 <param name="db_cond|db_select" value="hitdb"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
119 <param name="db_cond|version_select" value="1"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
120 <output name="out_file" file="hitdb1_json"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
121 </test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
122 <test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
123 <param name="db_cond|db_select" value="silva_euk_18S"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
124 <param name="db_cond|version_select" value="132"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
125 <output name="out_file" file="silvaeuk132_json"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
126 </test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
127 <test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
128 <param name="db_cond|db_select" value="PR2"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
129 <param name="db_cond|version_select" value="4.11.1"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
130 <output name="out_file" file="PR24.11.1_json"/>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
131 </test>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
132 </tests>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
133 <help><![CDATA[
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
134 Public Reference databases maintained by the DADA2 project
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
135 ..........................................................
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
136
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
137 The following refrence databases which are describes as maintained by the DADA2 project (https://benjjneb.github.io/dada2/training.html) are available
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
138
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
139 - Silva (https://www.arb-silva.de/)
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
140 - RDP (http://rdp.cme.msu.edu/)
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
141 - GreenGenes (http://greengenes.secondgenome.com/)
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
142 - UNITE general FASTA (https://unite.ut.ee/repository.php)
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
143
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
144 While Silva and RDP contain reference databases for taxonomy and species assignment, the greengenes and UNITE databases only contains a reference database for taxonomy assignment.
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
145
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
146 For the Silva databases check the license information: http://www.arb-silva.de/silva-license-information.
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
147
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
148 Except for UNITE all reference databases are downloaded from the corresponding zenodo links that are listed on the DADA2 website. The UNITE databases are taken from the links provided on the UNITE website
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
149
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
150 More detailed informations in the reference data bases can be found on the DADA2 website and contained links: https://benjjneb.github.io/dada2/training.html.
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
151
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
152 Further public Reference databases listed by the DADA2 project
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
153 ..............................................................
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
154
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
155 Several contributed reference databases are listed of the DADA2 project website (https://benjjneb.github.io/dada2/training.html):
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
156
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
157 - RefSeq + RDP (NCBI RefSeq 16S rRNA database supplemented by RDP)
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
diff changeset
158 - GTDB: Genome Taxonomy Database (More info: http://gtdb.ecogenomic.org/)
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
iuc
parents:
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159 - HitDB version 1 (Human InTestinal 16S rRNA) (https://github.com/microbiome/HITdb)
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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160 - RDP fungi LSU
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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161 - Silva Eukaryotic 18S
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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162 - PR2 (https://github.com/pr2database/pr2database)
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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163
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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164 Except for PR2, all reference databases are downloaded from the corresponding zenodo links that are listed on the DADA2 website. The PR2 database is taken from their github page.
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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165
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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166 More detailed informations in the reference data bases can be found on the DADA2 website and contained links: https://benjjneb.github.io/dada2/training.html.
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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167 ]]></help>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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168 <citations>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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169 <!-- silva -->
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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170 <citation type="doi">10.1093/nar/gks1219</citation>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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171 <!-- rdp -->>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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172 <citation type="doi">10.1093/nar/gkt1244</citation>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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173 <!-- greengenes -->
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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174 <citation type="doi">10.1128/AEM.03006-05</citation>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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175 <!-- unite -->
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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176 <citation type="doi">10.15156/BIO/786343</citation>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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177 <!-- TODO gtdb ??? -->
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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178 <!-- hitdb -->
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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179 <citation type="doi">10.1186/s12864-015-2265-y</citation>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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180 <!-- PR2 -->
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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181 <citation type="doi">10.1093/nar/gks1160</citation>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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182 </citations>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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183 </tool>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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184