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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
| author | iuc |
|---|---|
| date | Sat, 22 Nov 2025 20:07:44 +0000 |
| parents | f57c13f5878b |
| children |
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# This is a sample file distributed with Galaxy that is used to define a # list of dada2 reference data sets for taxonomy assignment, using three # tab separated columns: # # <unique_build_id> <display_name> <fasta_file_path> <taxlevels> # # Datasets can be retrieved from https://benjjneb.github.io/dada2/training.html # # taxlevels is a comma separated list of taxonomy levels silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpbccvw1gs/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpbccvw1gs/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmp7bm731ex/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_202_toGenus GTDB Version 202 to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_202_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_202_toSpecies GTDB Version 202 to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_202_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_202_toGenus GTDB Version 202 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_202_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_202_toSpecies GTDB Version 202 to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_202_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_138 Silva version 138 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_132 Silva version 132 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toSpecies RDP trainset 19 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_19_toGenus RDP trainset 19 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species rdp_16 RDP trainset 16 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species greengenes_13.84 GreenGenes version 13.84 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_202_toGenus GTDB Version 202 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_202_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_202_toSpecies GTDB Version 202 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_202_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species