Mercurial > repos > iuc > data_manager_dada2

annotate test-data/dada2_taxonomy.loc @ 8:0181efacb40a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
author iuc
date Sat, 22 Nov 2025 20:07:44 +0000
parents f57c13f5878b
children
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f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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1 # This is a sample file distributed with Galaxy that is used to define a
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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2 # list of dada2 reference data sets for taxonomy assignment, using three
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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3 # tab separated columns:
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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4 #
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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5 # <unique_build_id> <display_name> <fasta_file_path> <taxlevels>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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6 #
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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7 # Datasets can be retrieved from https://benjjneb.github.io/dada2/training.html
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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8 #
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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9 # taxlevels is a comma separated list of taxonomy levels
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0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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10 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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11 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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12 silva_138 Silva version 138 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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13 silva_138 Silva version 138 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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14 silva_132 Silva version 132 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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15 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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16 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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17 rdp_16 RDP trainset 16 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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18 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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19 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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20 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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21 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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22 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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23 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria &amp; Archaea) (11/2018) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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24 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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25 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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26 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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27 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpbccvw1gs/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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28 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpbccvw1gs/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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29 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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30 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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31 silva_138 Silva version 138 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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32 silva_138 Silva version 138 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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33 silva_132 Silva version 132 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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34 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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35 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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36 rdp_16 RDP trainset 16 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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37 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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38 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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39 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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40 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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41 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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42 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria &amp; Archaea) (11/2018) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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43 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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44 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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45 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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46 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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47 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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48 silva_138 Silva version 138 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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49 silva_132 Silva version 132 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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50 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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51 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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52 rdp_16 RDP trainset 16 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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53 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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54 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
55 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
56 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
57 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
58 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
59 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria &amp; Archaea) (11/2018) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
60 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
61 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
62 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
63 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
64 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
65 silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
66 silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
67 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
68 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
69 rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
70 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
71 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
72 greengenes_13.84 GreenGenes version 13.84 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
73 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
74 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
75 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
76 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria &amp; Archaea) (11/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
77 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
78 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
79 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
80 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
81 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
82 silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
83 silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
84 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
85 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
86 rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
87 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
88 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
89 greengenes_13.84 GreenGenes version 13.84 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
90 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
91 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
92 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
93 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria &amp; Archaea) (11/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
94 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
95 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
96 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
97 silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
98 silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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diff changeset
99 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
100 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
101 rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
102 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
103 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
104 greengenes_13.84 GreenGenes version 13.84 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
105 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
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106 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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107 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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108 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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109 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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110 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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111 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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112 silva_138 Silva version 138 /tmp/tmp7bm731ex/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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113 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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114 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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115 silva_138 Silva version 138 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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116 silva_132 Silva version 132 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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117 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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118 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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119 rdp_16 RDP trainset 16 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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120 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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121 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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122 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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123 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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124 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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125 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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126 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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127 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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128 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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129 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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130 silva_138 Silva version 138 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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131 silva_132 Silva version 132 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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132 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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133 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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134 rdp_16 RDP trainset 16 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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135 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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diff changeset
136 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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137 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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138 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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139 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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diff changeset
140 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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141 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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142 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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143 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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144 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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145 silva_138 Silva version 138 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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146 silva_132 Silva version 132 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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147 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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148 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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149 rdp_16 RDP trainset 16 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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diff changeset
150 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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diff changeset
151 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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152 greengenes_13.84 GreenGenes version 13.84 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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153 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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154 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
155 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
156 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
157 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
158 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
159 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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160 silva_138 Silva version 138 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
161 silva_132 Silva version 132 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
162 rdp_16 RDP trainset 16 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
163 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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164 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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165 silva_138 Silva version 138 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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166 silva_132 Silva version 132 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
167 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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168 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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169 rdp_16 RDP trainset 16 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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170 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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171 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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172 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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173 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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174 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
175 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
176 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
177 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
178 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
179 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
180 silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
181 silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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182 silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
183 silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
184 silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
185 silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
186 silva_138 Silva version 138 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
187 silva_132 Silva version 132 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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diff changeset
188 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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diff changeset
189 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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190 rdp_16 RDP trainset 16 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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diff changeset
191 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
192 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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193 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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194 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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195 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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diff changeset
196 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
197 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
198 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
199 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
200 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
201 silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
202 silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
203 silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
204 silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
205 silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
206 silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
207 silva_138 Silva version 138 /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
208 silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
209 silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
210 silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
211 silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
212 silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
213 silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
214 silva_138 Silva version 138 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
215 silva_132 Silva version 132 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
216 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
217 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
218 rdp_16 RDP trainset 16 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
219 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
220 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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221 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
222 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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223 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
224 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
225 gtdb_202_toGenus GTDB Version 202 to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_202_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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226 gtdb_202_toSpecies GTDB Version 202 to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_202_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
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227 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
228 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
229 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
230 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
231 silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
232 silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
233 silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
234 silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
235 silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
236 silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
237 silva_138 Silva version 138 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
238 silva_132 Silva version 132 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
239 rdp_19_toSpecies RDP trainset 19 to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
240 rdp_19_toGenus RDP trainset 19 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
241 rdp_16 RDP trainset 16 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
242 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
243 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
244 greengenes_13.84 GreenGenes version 13.84 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
245 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
246 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
247 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
248 gtdb_202_toGenus GTDB Version 202 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_202_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
249 gtdb_202_toSpecies GTDB Version 202 to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_202_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
250 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
251 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
252 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
253 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
254 silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
255 silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
256 silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
257 silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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parents: 0
diff changeset
258 silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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259 silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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260 silva_138 Silva version 138 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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261 silva_132 Silva version 132 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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262 rdp_19_toSpecies RDP trainset 19 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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263 rdp_19_toGenus RDP trainset 19 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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264 rdp_16 RDP trainset 16 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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265 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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266 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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267 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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268 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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269 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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270 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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271 gtdb_202_toGenus GTDB Version 202 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_202_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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272 gtdb_202_toSpecies GTDB Version 202 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_202_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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273 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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274 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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275 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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276 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species