Mercurial > repos > iuc > data_manager_fetch_refseq

comparison data_manager_conf.xml @ 0:8b91891ae805 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit a572f1f01161527ff6ed4af05bb2e073a8ca903b
author iuc
date Mon, 01 Oct 2018 15:36:01 -0400
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children f1e545aa76c7
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-1:000000000000 0:8b91891ae805
1 <?xml version="1.0"?>
2 <data_managers>
3 <data_manager tool_file="data_manager/fetch_refseq.xml" id="fetch_genome_fetch_refseq">
4 <data_table name="all_fasta">
5 <output>
6 <column name="value" />
7 <column name="dbkey" />
8 <column name="name" />
9 <column name="path" output_ref="output_file" >
10 <move type="file">
11 <source>${path}</source>
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</target>
13 </move>
14 <value_translation>refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</value_translation>
15 <value_translation type="function">abspath</value_translation>
16 </column>
17 </output>
18 </data_table>
19 </data_manager>
20 </data_managers>