Mercurial > repos > iuc > data_manager_fetch_refseq

diff data_manager_conf.xml @ 0:8b91891ae805 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit a572f1f01161527ff6ed4af05bb2e073a8ca903b
author iuc
date Mon, 01 Oct 2018 15:36:01 -0400
parents
children f1e545aa76c7
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Mon Oct 01 15:36:01 2018 -0400
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<data_managers>    
+    <data_manager tool_file="data_manager/fetch_refseq.xml" id="fetch_genome_fetch_refseq">
+        <data_table name="all_fasta">
+            <output>
+                <column name="value" />
+                <column name="dbkey" />
+                <column name="name" />
+                <column name="path" output_ref="output_file" >
+                    <move type="file">
+                        <source>${path}</source>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</target>
+                    </move>
+                    <value_translation>refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>    
+</data_managers>