Mercurial > repos > iuc > data_manager_gemini_database_downloader
comparison data_manager/data_manager_gemini_download.xml @ 0:fd9e9ac5ecb3 draft
Imported from capsule None
| author | iuc |
|---|---|
| date | Mon, 25 Aug 2014 17:15:46 -0400 |
| parents | |
| children | a580422f6f1d |
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| -1:000000000000 | 0:fd9e9ac5ecb3 |
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| 1 <tool id="data_manager_gemini_download" name="GEMINI Download" version="0.9.1" tool_type="manage_data"> | |
| 2 <description>Download a new database</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.10.0">gemini</requirement> | |
| 5 </requirements> | |
| 6 <command interpreter="python"> | |
| 7 data_manager_gemini_download.py "$out_file" | |
| 8 </command> | |
| 9 <inputs> | |
| 10 <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True" | |
| 11 label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/> | |
| 12 | |
| 13 <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True" | |
| 14 label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data name="out_file" format="data_manager_json" label="${tool.name}"/> | |
| 18 </outputs> | |
| 19 <stdio> | |
| 20 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> | |
| 21 <exit_code range="1:" level="fatal" description="Error" /> | |
| 22 </stdio> | |
| 23 <tests> | |
| 24 </tests> | |
| 25 <help> | |
| 26 | |
| 27 This tool downloads the GEMINI databases. | |
| 28 | |
| 29 For details about this tool, please go to http://http://gemini.readthedocs.org | |
| 30 | |
| 31 </help> | |
| 32 <citations> | |
| 33 <citation type="doi">10.1371/journal.pcbi.1003153</citation> | |
| 34 <yield /> | |
| 35 </citations> | |
| 36 </tool> | |
| 37 |