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view data_manager/data_manager_gemini_download.xml @ 3:172815da3d41 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 8652f36a3a3838dca989426961561e81432acf4f
author iuc
date Tue, 04 Apr 2017 18:09:05 -0400
parents 345412d58d75
children fe5a9a7d95b0
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<tool id="data_manager_gemini_download" name="GEMINI Download" version="0.18.1" tool_type="manage_data">
    <description>Download a new database</description>
    <requirements>
        <requirement type="package" version="0.18.1">gemini</requirement>
    </requirements>
    <command detect_errors="exit_code">
        python '$__tool_directory__/data_manager_gemini_download.py' '$out_file'
    </command>
    <inputs>
        <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True"
            label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/>
        <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True"
            label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/>
    </inputs>
    <outputs>
        <data name="out_file" format="data_manager_json" label="${tool.name}"/>
    </outputs>
    <tests>
    </tests>
    <help>
This tool downloads the GEMINI databases.

For details about this tool, please go to http://gemini.readthedocs.org
    </help>
    <citations>
        <citation type="doi">10.1371/journal.pcbi.1003153</citation>
    </citations>
</tool>