Mercurial > repos > iuc > data_manager_gemini_database_downloader

annotate data_manager/data_manager_gemini_download.xml @ 3:172815da3d41 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 8652f36a3a3838dca989426961561e81432acf4f
author iuc
date Tue, 04 Apr 2017 18:09:05 -0400
parents 345412d58d75
children fe5a9a7d95b0
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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1 <tool id="data_manager_gemini_download" name="GEMINI Download" version="0.18.1" tool_type="manage_data">
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2 <description>Download a new database</description>
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3 <requirements>
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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4 <requirement type="package" version="0.18.1">gemini</requirement>
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5 </requirements>
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172815da3d41 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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6 <command detect_errors="exit_code">
172815da3d41 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 8652f36a3a3838dca989426961561e81432acf4f
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7 python '$__tool_directory__/data_manager_gemini_download.py' '$out_file'
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8 </command>
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9 <inputs>
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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10 <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True"
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11 label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/>
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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12 <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True"
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13 label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/>
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14 </inputs>
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15 <outputs>
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172815da3d41 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 8652f36a3a3838dca989426961561e81432acf4f
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16 <data name="out_file" format="data_manager_json" label="${tool.name}"/>
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17 </outputs>
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18 <tests>
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19 </tests>
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20 <help>
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21 This tool downloads the GEMINI databases.
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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23 For details about this tool, please go to http://gemini.readthedocs.org
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24 </help>
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25 <citations>
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26 <citation type="doi">10.1371/journal.pcbi.1003153</citation>
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27 </citations>
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28 </tool>
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