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1
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1 <tool id="data_manager_gemini_download" name="GEMINI Download" version="0.10.0" tool_type="manage_data">
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0
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2 <description>Download a new database</description>
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3 <requirements>
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4 <requirement type="package" version="0.10.0">gemini</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 data_manager_gemini_download.py "$out_file"
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8 </command>
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9 <inputs>
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10 <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True"
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11 label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/>
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12
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13 <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True"
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14 label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/>
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15 </inputs>
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16 <outputs>
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17 <data name="out_file" format="data_manager_json" label="${tool.name}"/>
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18 </outputs>
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19 <stdio>
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20 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
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21 <exit_code range="1:" level="fatal" description="Error" />
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22 </stdio>
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23 <tests>
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24 </tests>
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25 <help>
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26
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27 This tool downloads the GEMINI databases.
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28
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29 For details about this tool, please go to http://http://gemini.readthedocs.org
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30
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31 </help>
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32 <citations>
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33 <citation type="doi">10.1371/journal.pcbi.1003153</citation>
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34 <yield />
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35 </citations>
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36 </tool>
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37
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