Mercurial > repos > iuc > data_manager_gemini_database_downloader

annotate data_manager/data_manager_gemini_download.xml @ 2:345412d58d75 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
author iuc
date Thu, 18 Feb 2016 08:49:06 -0500
parents a580422f6f1d
children 172815da3d41
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
iuc
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1 <tool id="data_manager_gemini_download" name="GEMINI Download" version="0.18.1" tool_type="manage_data">
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2 <description>Download a new database</description>
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3 <requirements>
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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4 <requirement type="package" version="0.18.1">gemini</requirement>
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5 </requirements>
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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6 <stdio>
345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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7 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
iuc
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8 <exit_code range="1:" level="fatal" description="Error" />
345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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9 </stdio>
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10 <command interpreter="python">
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11 data_manager_gemini_download.py "$out_file"
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12 </command>
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13 <inputs>
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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14 <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True"
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15 label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/>
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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16 <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True"
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17 label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/>
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18 </inputs>
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19 <outputs>
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20 <data name="out_file" format="data_manager_json" label="${tool.name}"/>
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21 </outputs>
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22 <tests>
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23 </tests>
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24 <help>
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25
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26 This tool downloads the GEMINI databases.
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345412d58d75 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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28 For details about this tool, please go to http://gemini.readthedocs.org
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30 </help>
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31 <citations>
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32 <citation type="doi">10.1371/journal.pcbi.1003153</citation>
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33 <yield />
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34 </citations>
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35 </tool>
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