Mercurial > repos > iuc > data_manager_gemini_database_downloader
view data_manager/data_manager_gemini_download.xml @ 0:fd9e9ac5ecb3 draft
Imported from capsule None
author | iuc |
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date | Mon, 25 Aug 2014 17:15:46 -0400 |
parents | |
children | a580422f6f1d |
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<tool id="data_manager_gemini_download" name="GEMINI Download" version="0.9.1" tool_type="manage_data"> <description>Download a new database</description> <requirements> <requirement type="package" version="0.10.0">gemini</requirement> </requirements> <command interpreter="python"> data_manager_gemini_download.py "$out_file" </command> <inputs> <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True" label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/> <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True" label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/> </inputs> <outputs> <data name="out_file" format="data_manager_json" label="${tool.name}"/> </outputs> <stdio> <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> <exit_code range="1:" level="fatal" description="Error" /> </stdio> <tests> </tests> <help> This tool downloads the GEMINI databases. For details about this tool, please go to http://http://gemini.readthedocs.org </help> <citations> <citation type="doi">10.1371/journal.pcbi.1003153</citation> <yield /> </citations> </tool>