Mercurial > repos > iuc > data_manager_metaphlan_database_downloader

comparison data_manager/data_manager_metaphlan_download.xml @ 3:4ba60cb14cb0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit f5c02de49bb33445667dd359bc7ce5801140b207
author iuc
date Wed, 05 Apr 2023 15:01:49 +0000
parents 5fe20c915fa6
children 0cb27ea69dc1
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equal deleted inserted replaced
2:5fe20c915fa6 3:4ba60cb14cb0
3 <requirements> 3 <requirements>
4 <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement> 4 <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement>
5 </requirements> 5 </requirements>
6 <macros> 6 <macros>
7 <token name="@TOOL_VERSION@">4.0.6</token> 7 <token name="@TOOL_VERSION@">4.0.6</token>
8 <token name="@VERSION_SUFFIX@">0</token> 8 <token name="@VERSION_SUFFIX@">1</token>
9 </macros> 9 </macros>
10 <stdio> 10 <stdio>
11 <exit_code range=":-1" level="fatal" description="Error: Cannot open file"/> 11 <exit_code range=":-1" level="fatal" description="Error: Cannot open file"/>
12 <exit_code range="1:" level="fatal" description="Error"/> 12 <exit_code range="1:" level="fatal" description="Error"/>
13 </stdio> 13 </stdio>
16 --index '$index' 16 --index '$index'
17 --json '$out_file' 17 --json '$out_file'
18 ]]></command> 18 ]]></command>
19 <inputs> 19 <inputs>
20 <param name="index" type="select" label="Version"> 20 <param name="index" type="select" label="Version">
21 <option value="mpa_vOct22_CHOCOPhlAnSGB_202212" selected="true">mpa_vOct22_CHOCOPhlAnSGB_202212</option> 21 <option value="mpa_vOct22_CHOCOPhlAnSGB_202212" selected="true">FULL: mpa_vOct22_CHOCOPhlAnSGB_202212</option>
22 <option value="mpa_vJan21_CHOCOPhlAnSGB_202103">mpa_vJan21_CHOCOPhlAnSGB_202103</option> 22 <option value="mpa_vJan21_CHOCOPhlAnSGB_202103">FULL: mpa_vJan21_CHOCOPhlAnSGB_202103</option>
23 <option value="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103">DEMO: mpa_vJan21_TOY_CHOCOPhlAnSGB_202103</option>
23 </param> 24 </param>
24 </inputs> 25 </inputs>
25 <outputs> 26 <outputs>
26 <data name="out_file" format="data_manager_json" label="${tool.name}"/> 27 <data name="out_file" format="data_manager_json" label="${tool.name}"/>
27 </outputs> 28 </outputs>
28 <tests> 29 <tests>
29 <!--
30 <test expect_num_outputs="1"> 30 <test expect_num_outputs="1">
31 <param name="index" value="mpa_vOct22_CHOCOPhlAnSGB_202212"/> 31 <param name="index" value="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103"/>
32 <output name="out_file"> 32 <output name="out_file">
33 <assert_contents> 33 <assert_contents>
34 <has_text text="mpa_vOct22_CHOCOPhlAnSGB_202212"/> 34 <has_text text="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103"/>
35 <has_text text="MetaPhlAn clade-specific marker genes (mpa_vOct22_CHOCOPhlAnSGB_202212)"/> 35 <has_text text="MetaPhlAn clade-specific marker genes (mpa_vJan21_TOY_CHOCOPhlAnSGB_202103)"/>
36 </assert_contents> 36 </assert_contents>
37 </output> 37 </output>
38 </test> 38 </test>
39 -->
40 </tests> 39 </tests>
41 <help><![CDATA[ 40 <help><![CDATA[
42 This tool downloads and builds the MetaPhlAn databases. 41 This tool downloads and builds the MetaPhlAn databases.
43 ]]></help> 42 ]]></help>
44 <citations> 43 <citations>