Mercurial > repos > iuc > data_manager_metaphlan_database_downloader
diff data_manager/data_manager_metaphlan_download.xml @ 2:5fe20c915fa6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 57df6e8a0ffd145e560f7c7e20cfedbbe2ce01d2
| author | iuc |
|---|---|
| date | Tue, 28 Mar 2023 18:54:12 +0000 |
| parents | 9c43baa60906 |
| children | 4ba60cb14cb0 |
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--- a/data_manager/data_manager_metaphlan_download.xml Wed Apr 21 21:37:49 2021 +0000 +++ b/data_manager/data_manager_metaphlan_download.xml Tue Mar 28 18:54:12 2023 +0000 @@ -1,15 +1,15 @@ -<tool id="data_manager_metaphlan_download" name="Download and build MetaPhlAn database" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="20.01"> +<tool id="data_manager_metaphlan_download" name="Download and build MetaPhlAn database" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="22.05"> <description></description> <requirements> <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement> </requirements> <macros> - <token name="@TOOL_VERSION@">3.0.7</token> + <token name="@TOOL_VERSION@">4.0.6</token> <token name="@VERSION_SUFFIX@">0</token> </macros> <stdio> - <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> - <exit_code range="1:" level="fatal" description="Error" /> + <exit_code range=":-1" level="fatal" description="Error: Cannot open file"/> + <exit_code range="1:" level="fatal" description="Error"/> </stdio> <command><![CDATA[ python '$__tool_directory__/data_manager_metaphlan_download.py' @@ -18,22 +18,25 @@ ]]></command> <inputs> <param name="index" type="select" label="Version"> - <option value="mpa_v30_CHOCOPhlAn_201901" selected="true">mpa_v30_CHOCOPhlAn_201901</option> + <option value="mpa_vOct22_CHOCOPhlAnSGB_202212" selected="true">mpa_vOct22_CHOCOPhlAnSGB_202212</option> + <option value="mpa_vJan21_CHOCOPhlAnSGB_202103">mpa_vJan21_CHOCOPhlAnSGB_202103</option> </param> </inputs> <outputs> <data name="out_file" format="data_manager_json" label="${tool.name}"/> </outputs> <tests> - <test expect_num_outputs="1"> - <param name="index" value="mpa_v30_CHOCOPhlAn_201901"/> - <output name="out_file"> - <assert_contents> - <has_text text="mpa_v30_CHOCOPhlAn_201901-"/> - <has_text text="MetaPhlAn clade-specific marker genes (mpa_v30_CHOCOPhlAn_201901)"/> - </assert_contents> - </output> - </test> + <!-- + <test expect_num_outputs="1"> + <param name="index" value="mpa_vOct22_CHOCOPhlAnSGB_202212"/> + <output name="out_file"> + <assert_contents> + <has_text text="mpa_vOct22_CHOCOPhlAnSGB_202212"/> + <has_text text="MetaPhlAn clade-specific marker genes (mpa_vOct22_CHOCOPhlAnSGB_202212)"/> + </assert_contents> + </output> + </test> + --> </tests> <help><![CDATA[ This tool downloads and builds the MetaPhlAn databases.