Mercurial > repos > iuc > data_manager_metaphlan_database_downloader
view data_manager/data_manager_metaphlan_download.xml @ 1:9c43baa60906 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit ed0001e3b4e3b25ee5754addac8a67f9cabd7d88"
author | iuc |
---|---|
date | Wed, 21 Apr 2021 21:37:49 +0000 |
parents | 169b08c9713c |
children | 5fe20c915fa6 |
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<tool id="data_manager_metaphlan_download" name="Download and build MetaPhlAn database" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="20.01"> <description></description> <requirements> <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement> </requirements> <macros> <token name="@TOOL_VERSION@">3.0.7</token> <token name="@VERSION_SUFFIX@">0</token> </macros> <stdio> <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> <exit_code range="1:" level="fatal" description="Error" /> </stdio> <command><![CDATA[ python '$__tool_directory__/data_manager_metaphlan_download.py' --index '$index' --json '$out_file' ]]></command> <inputs> <param name="index" type="select" label="Version"> <option value="mpa_v30_CHOCOPhlAn_201901" selected="true">mpa_v30_CHOCOPhlAn_201901</option> </param> </inputs> <outputs> <data name="out_file" format="data_manager_json" label="${tool.name}"/> </outputs> <tests> <test expect_num_outputs="1"> <param name="index" value="mpa_v30_CHOCOPhlAn_201901"/> <output name="out_file"> <assert_contents> <has_text text="mpa_v30_CHOCOPhlAn_201901-"/> <has_text text="MetaPhlAn clade-specific marker genes (mpa_v30_CHOCOPhlAn_201901)"/> </assert_contents> </output> </test> </tests> <help><![CDATA[ This tool downloads and builds the MetaPhlAn databases. ]]></help> <citations> <citation type="doi">1101/2020.11.19.388223</citation> <yield /> </citations> </tool>