Mercurial > repos > iuc > data_manager_metaphlan_database_downloader
changeset 1:9c43baa60906 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit ed0001e3b4e3b25ee5754addac8a67f9cabd7d88"
| author | iuc |
|---|---|
| date | Wed, 21 Apr 2021 21:37:49 +0000 |
| parents | 169b08c9713c |
| children | 5fe20c915fa6 |
| files | data_manager/data_manager_metaphlan_download.xml test-data/metaphlan_database.loc tool_data_table_conf.xml.test |
| diffstat | 3 files changed, 19 insertions(+), 0 deletions(-) [+] |
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--- a/data_manager/data_manager_metaphlan_download.xml Mon Apr 19 20:54:06 2021 +0000 +++ b/data_manager/data_manager_metaphlan_download.xml Wed Apr 21 21:37:49 2021 +0000 @@ -25,6 +25,15 @@ <data name="out_file" format="data_manager_json" label="${tool.name}"/> </outputs> <tests> + <test expect_num_outputs="1"> + <param name="index" value="mpa_v30_CHOCOPhlAn_201901"/> + <output name="out_file"> + <assert_contents> + <has_text text="mpa_v30_CHOCOPhlAn_201901-"/> + <has_text text="MetaPhlAn clade-specific marker genes (mpa_v30_CHOCOPhlAn_201901)"/> + </assert_contents> + </output> + </test> </tests> <help><![CDATA[ This tool downloads and builds the MetaPhlAn databases.
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/metaphlan_database.loc Wed Apr 21 21:37:49 2021 +0000 @@ -0,0 +1,4 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of metagenomics files. +#file has this format (white space characters are TAB characters) +mpa_v30_CHOCOPhlAn_201901-20210420 MetaPhlAn clade-specific marker genes (mpa_v30_CHOCOPhlAn_201901) mpa_v30_CHOCOPhlAn_201901 /path/to/data
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.test Wed Apr 21 21:37:49 2021 +0000 @@ -0,0 +1,6 @@ +<tables> + <table name="metaphlan_database" comment_char="#"> + <columns>value, name, dbkey, path</columns> + <file path="${__HERE__}/test-data/metaphlan_database.loc" /> + </table> +</tables> \ No newline at end of file