data_manager_mothur_toolsuite: data_manager/data_manager_fetch_mothur_reference

annotate data_manager/data_manager_fetch_mothur_reference_data.xml @ 2:0e532fc0a0a6 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309"

author	iuc
date	Thu, 17 Sep 2020 09:37:41 +0000
parents	aec831b54a5b
children	0db22932bc39

rev	line source
0 ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	1 <?xml version="1.0"?>
2 0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	2 <tool id="data_manager_fetch_mothur_reference_data" name="Fetch Mothur toolsuite reference data" version="0.1.5" tool_type="manage_data" profile="19.05">
0 ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	3 <description>Fetch and install reference data for Mothur</description>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	4 <requirements>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	5 <requirement type="package" version="2.7">python</requirement>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	6 </requirements>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	7 <command><![CDATA[
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	8 python '$__tool_directory__/fetch_mothur_reference_data.py'
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	9 --source=$data_source.data_source_selector
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	10 #if str( $data_source.data_source_selector ) == "mothur_website"
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	11 --datasets '${data_source.ref_data}'
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	12 #elif str( $data_source.data_source_selector ) == "filesystem_paths"
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	13 --description '${data_source.description}'
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	14 --paths '${data_source.paths}'
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	15 #if $data_source.create_symlink
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	16 --link
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	17 #end if
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	18 #end if
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	19 '${out_file}'
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	20 ]]></command>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	21 <inputs>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	22 <conditional name="data_source">
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	23 <param name="data_source_selector" type="select"
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	24 label="Choose the source for the reference data">
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	25 <option value="mothur_website">Mothur website</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	26 <option value="filesystem_paths">Filesystem paths</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	27 </param>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	28 <when value="mothur_website">
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	29 <param name="ref_data" type="select" display="checkboxes" multiple="true"
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	30 label="Reference dataset to install">
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	31 <option value="lookup_titanium">GS FLX Titanium lookup files</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	32 <option value="lookup_gsflx">GSFLX lookup files</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	33 <option value="lookup_gs20">GS20 lookup files</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	34 <option value="RDP_v16">RDP reference files (training set version 16)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	35 <option value="RDP_v14">RDP reference files (training set version 14)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	36 <option value="RDP_v10">RDP reference files (training set version 10)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	37 <option value="RDP_v9">RDP reference files (training set version 9)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	38 <option value="RDP_v7">RDP reference files (training set version 7)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	39 <option value="RDP_v6">RDP reference files (training set version 6)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	40 <option value="silva_release_128">SILVA reference files (release 128)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	41 <option value="silva_release_123">SILVA reference files (release 123)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	42 <option value="silva_release_119">SILVA reference files (release 119)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	43 <option value="silva_release_102">SILVA reference files (release 102)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	44 <option value="greengenes_August2013">Greengenes reference taxonomy and alignment v13.8 (August 2013)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	45 <option value="greengenes_May2013">Greengenes reference taxonomy and alignment v13.5 (May 2013)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	46 <option value="greengenes_old">Greengenes reference taxonomy and alignment (pre-May 2013)</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	47 <option value="greengenes_gold_alignment">Greengenes gold alignment</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	48 <option value="secondary_structure_maps_silva">SILVA secondary structure maps</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	49 <option value="secondary_structure_maps_greengenes">Greengenes secondary structure maps</option>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	50 </param>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	51 </when>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	52 <when value="filesystem_paths">
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	53 <param name="description" type="text" value="" size="50"
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	54 label="Description of the data" optional="False" />
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	55 <param name="paths" type="text" value="" area="True" size="10x50"
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	56 label="Paths to upload" optional="False"
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	57 help="Upload all files pasted in the box. The (recursive) contents of any pasted directories will be added as well." />
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	58 <param type="boolean" name="create_symlink" truevalue="create_symlink"
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	59 falsevalue="copy_file"
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	60 label="Create symlinks to data instead of copying into Galaxy" checked="on" />
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	61 </when>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	62 </conditional>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	63 </inputs>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	64 <outputs>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	65 <data name="out_file" format="data_manager_json" />
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	66 </outputs>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	67 <tests>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	68 <test>
1 aec831b54a5b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e" iuc parents: 0 diff changeset	69 <param name="data_source\|ref_data" value="lookup_titanium"/>
0 ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	70 <output name="out_file">
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	71 <assert_contents>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	72 <has_text text="GS FLX Titanium" />
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	73 <has_text text="LookUp_Titanium.pat" />
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	74 </assert_contents>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	75 </output>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	76 </test>
2 0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	77 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	78 <param name="data_source\|ref_data" value="lookup_gsflx"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	79 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	80 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	81 <has_text text="GSFLX" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	82 <has_text text="LookUp_GSFLX.pat" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	83 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	84 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	85 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	86 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	87 <param name="data_source\|ref_data" value="lookup_gs20"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	88 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	89 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	90 <has_text text="GS20" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	91 <has_text text="LookUp_GS20.pat" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	92 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	93 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	94 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	95 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	96 <param name="data_source\|ref_data" value="RDP_v16"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	97 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	98 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	99 <has_text text="16S rRNA RDP training set 16" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	100 <has_text text="trainset16_022016.rdp.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	101 <has_text text="trainset16_022016.rdp.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	102 <has_text text="trainset16_022016.pds.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	103 <has_text text="trainset16_022016.pds.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	104 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	105 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	106 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	107 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	108 <param name="data_source\|ref_data" value="RDP_v14"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	109 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	110 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	111 <has_text text="16S rRNA RDP training set 14" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	112 <has_text text="trainset14_032015.rdp.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	113 <has_text text="trainset14_032015.rdp.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	114 <has_text text="trainset14_032015.pds.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	115 <has_text text="trainset14_032015.pds.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	116 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	117 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	118 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	119 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	120 <param name="data_source\|ref_data" value="RDP_v10"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	121 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	122 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	123 <has_text text="16S rRNA RDP training set 10" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	124 <has_text text="trainset10_082014.rdp.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	125 <has_text text="trainset10_082014.rdp.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	126 <has_text text="trainset10_082014.pds.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	127 <has_text text="trainset10_082014.pds.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	128 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	129 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	130 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	131 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	132 <param name="data_source\|ref_data" value="RDP_v9"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	133 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	134 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	135 <has_text text="16S rRNA PDS training set 9" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	136 <has_text text="trainset9_032012.rdp.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	137 <has_text text="trainset9_032012.rdp.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	138 <has_text text="trainset9_032012.pds.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	139 <has_text text="trainset9_032012.pds.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	140 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	141 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	142 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	143 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	144 <param name="data_source\|ref_data" value="RDP_v7"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	145 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	146 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	147 <has_text text="16S rRNA RDP training set 7" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	148 <has_text text="FungiLSU_train_1400bp_8506_mod.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	149 <has_text text="FungiLSU_train_1400bp_8506_mod.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	150 <has_text text="trainset7_112011.rdp.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	151 <has_text text="trainset7_112011.rdp.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	152 <has_text text="trainset7_112011.pds.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	153 <has_text text="trainset7_112011.pds.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	154 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	155 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	156 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	157 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	158 <param name="data_source\|ref_data" value="RDP_v6"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	159 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	160 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	161 <has_text text="RDP training set 6" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	162 <has_text text="trainset6_032010.rdp.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	163 <has_text text="trainset6_032010.rdp.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	164 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	165 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	166 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	167 <!-- SILVA data is to large (>1GB each) for CI testing on github actions
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	168 so we skip them -->
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	169 <!--<test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	170 <param name="data_source\|ref_data" value="silva_release_128"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	171 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	172 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	173 <has_text text="SILVA release 128" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	174 <has_text text="silva.nr_v128.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	175 <has_text text="silva.seed_v128.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	176 <has_text text="silva.nr_v128.align" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	177 <has_text text="silva.seed_v128.align" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	178 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	179 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	180 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	181 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	182 <param name="data_source\|ref_data" value="silva_release_123"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	183 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	184 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	185 <has_text text="SILVA release 123" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	186 <has_text text="silva.nr_v123.align" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	187 <has_text text="silva.seed_v123.align" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	188 <has_text text="silva.nr_v123.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	189 <has_text text="silva.seed_v123.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	190 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	191 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	192 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	193 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	194 <param name="data_source\|ref_data" value="silva_release_119"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	195 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	196 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	197 <has_text text="SILVA release 119" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	198 <has_text text="silva.nr_v119.align" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	199 <has_text text="silva.seed_v119.align" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	200 <has_text text="silva.nr_v119.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	201 <has_text text="silva.seed_v119.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	202 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	203 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	204 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	205 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	206 <param name="data_source\|ref_data" value="silva_release_102"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	207 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	208 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	209 <has_text text="SILVA release 102" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	210 <has_text text="silva.bacteria.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	211 <has_text text="silva.gold.ng.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	212 <has_text text="nogap.archaea.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	213 <has_text text="silva.archaea.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	214 <has_text text="nogap.eukarya.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	215 <has_text text="silva.eukarya.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	216 <has_text text="silva.bacteria.gg.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	217 <has_text text="silva.bacteria.ncbi.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	218 <has_text text="silva.bacteria.rdp.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	219 <has_text text="silva.bacteria.rdp6.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	220 <has_text text="silva.bacteria.silva.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	221 <has_text text="silva.archaea.gg.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	222 <has_text text="silva.archaea.ncbi.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	223 <has_text text="silva.archaea.rdp.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	224 <has_text text="silva.archaea.silva.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	225 <has_text text="silva.eukarya.ncbi.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	226 <has_text text="silva.eukarya.silva.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	227 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	228 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	229 </test>-->
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	230
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	231 <!-- also greengenes is large (400MB-1.5GB) so only tests for older
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	232 (smaller) releases are executed -->
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	233 <!--<test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	234 <param name="data_source\|ref_data" value="greengenes_August2013"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	235 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	236 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	237 <has_text text="Greengenes August 2013" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	238 <has_text text="gg_13_8_99.gg.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	239 <has_text text="gg_13_8_99.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	240 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	241 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	242 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	243 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	244 <param name="data_source\|ref_data" value="greengenes_May2013"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	245 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	246 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	247 <has_text text="Greengenes May 2013" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	248 <has_text text="gg_13_5_99.pds.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	249 <has_text text="gg_13_5_99.gg.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	250 <has_text text="gg_13_5_99.align" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	251 <has_text text="gg_13_5_99.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	252 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	253 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	254 </test>-->
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	255 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	256 <param name="data_source\|ref_data" value="greengenes_old"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	257 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	258 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	259 <has_text text="Greengenes pre-May 2013" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	260 <has_text text="gg_99.pds.tax" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	261 <has_text text="core_set_aligned.imputed.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	262 <has_text text="gg_99.pds.ng.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	263 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	264 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	265 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	266 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	267 <param name="data_source\|ref_data" value="greengenes_gold_alignment"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	268 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	269 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	270 <has_text text="Greengenes gold alignment" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	271 <has_text text="rRNA16S.gold.NAST_ALIGNED.fasta" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	272 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	273 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	274 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	275
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	276 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	277 <param name="data_source\|ref_data" value="secondary_structure_maps_silva"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	278 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	279 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	280 <has_text text="SILVA" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	281 <has_text text="silva.ss.map" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	282 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	283 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	284 </test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	285 <test>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	286 <param name="data_source\|ref_data" value="secondary_structure_maps_greengenes"/>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	287 <output name="out_file">
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	288 <assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	289 <has_text text="Greengenes" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	290 <has_text text="gg.ss.map" />
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	291 </assert_contents>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	292 </output>
0e532fc0a0a6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309" iuc parents: 1 diff changeset	293 </test>
0 ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	294 </tests>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	295 <help>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	296 .. class:: infomark
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	297
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	298 What it does
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	299
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	300 This tool fetches reference data used by the mothur_toolsuite set of Galaxy tools,
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	301 and populates the appropriate data tables.
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	302
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	303 The reference data can be imported directly from the Mothur website, or from files
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	304 in a server directory.
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	305
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	306 Files are added to the following data tables based on file extension:
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	307
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	308 * mothur_lookup: for .pat files
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	309 * mothur_aligndb: for .fasta files
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	310 * mothur_map: for .map files
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	311 * mothur_taxonomy: for .tax files
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	312
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	313 ------
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	314
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	315 Importing from Mothur website
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	316
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	317 Reference data sets provided by the Mothur developers can be downloaded from the
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	318 Mothur website. See the following pages to get more information about each dataset:
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	319
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	320 * Lookup data: http://www.mothur.org/wiki/Lookup_files
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	321 * RDP reference data: http://www.mothur.org/wiki/RDP_reference_files
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	322 * Silva data: http://www.mothur.org/wiki/Silva_reference_files
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	323 * Greengenes data: http://www.mothur.org/wiki/Greengenes-formatted_databases
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	324 * Secondary structure maps: http://www.mothur.org/wiki/Secondary_structure_map
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	325
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	326 Importing from file system paths
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	327
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	328 If reference data is already on the server filesystem then use this option to
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	329 import it into the Mothur data tables. The appropriate data tables are determined
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	330 based on the file extensions.
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	331
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	332 Optionally a description can be added which will appear next to the base of the
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	333 reference file name in the data table entry.
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	334
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	335 ------
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	336
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	337 .. class:: warningmark
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	338
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	339 A note on Lane masks
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	340
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	341 Lane mask data is also available via the Mothur website (files ending in ".filter"):
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	342
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	343 * http://www.mothur.org/wiki/Lane_mask
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	344
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	345 but as these data are not currently used in the toolsuite, they cannot be imported
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	346 using this data manager.
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	347
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	348 </help>
ab7a7e798c34 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea iuc parents: diff changeset	349 </tool>

Mercurial > repos > iuc > data_manager_mothur_toolsuite

annotate data_manager/data_manager_fetch_mothur_reference_data.xml @ 2:0e532fc0a0a6 draft