Mercurial > repos > iuc > data_manager_mothur_toolsuite
view data_manager_conf.xml @ 2:0e532fc0a0a6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit b824ec6d0faa5353c5893b5a2a540b8251cae309"
author | iuc |
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date | Thu, 17 Sep 2020 09:37:41 +0000 |
parents | ab7a7e798c34 |
children |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/data_manager_fetch_mothur_reference_data.xml" id="data_manager_mothur_fetch_reference_data"> <data_table name="mothur_aligndb"> <output> <column name="name" /> <column name="value" output_ref="out_file" > <move type="file"> <source>${value}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/aligndb/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/aligndb/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="mothur_lookup"> <output> <column name="name" /> <column name="value" output_ref="out_file" > <move type="file"> <source>${value}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/lookup/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/lookup/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="mothur_map"> <output> <column name="name" /> <column name="value" output_ref="out_file" > <move type="file"> <source>${value}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/map/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/map/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="mothur_taxonomy"> <output> <column name="name" /> <column name="value" output_ref="out_file" > <move type="file"> <source>${value}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/taxonomy/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/taxonomy/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> </data_managers>