Mercurial > repos > iuc > data_manager_mothur_toolsuite
view data_manager_conf.xml @ 5:f21e77139fb5 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 09b56ef3e09ad6c5923c88616fea5cbd77d87616
author | iuc |
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date | Mon, 18 Dec 2023 09:36:45 +0000 |
parents | ab7a7e798c34 |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/data_manager_fetch_mothur_reference_data.xml" id="data_manager_mothur_fetch_reference_data"> <data_table name="mothur_aligndb"> <output> <column name="name" /> <column name="value" output_ref="out_file" > <move type="file"> <source>${value}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/aligndb/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/aligndb/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="mothur_lookup"> <output> <column name="name" /> <column name="value" output_ref="out_file" > <move type="file"> <source>${value}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/lookup/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/lookup/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="mothur_map"> <output> <column name="name" /> <column name="value" output_ref="out_file" > <move type="file"> <source>${value}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/map/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/map/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="mothur_taxonomy"> <output> <column name="name" /> <column name="value" output_ref="out_file" > <move type="file"> <source>${value}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/taxonomy/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/taxonomy/${value}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> </data_managers>