Mercurial > repos > iuc > data_manager_qiime_database_downloader

annotate data_manager_conf.xml @ 0:f8608fddfb23 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
author iuc
date Mon, 15 May 2017 11:08:43 -0400
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f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
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1 <?xml version="1.0"?>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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2 <data_managers>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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3 <data_manager tool_file="data_manager/data_manager_qiime_download.xml" id="data_manager_qiime_download" >
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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4 <data_table name="qiime_rep_set"> <!-- Defines a Data Table to be modified. -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
iuc
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5 <output> <!-- Handle the output of the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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9 <column name="path" output_ref="out_file" >
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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10 <move type="file">
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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11 <source>${path}</source>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_rep_set/${dbkey}</target>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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13 </move>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_rep_set/${dbkey}</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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15 <value_translation type="function">abspath</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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16 </column>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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17 </output>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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18 </data_table>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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19 <data_table name="qiime_rep_set_aligned"> <!-- Defines a Data Table to be modified. -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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20 <output> <!-- Handle the output of the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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21 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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22 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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23 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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24 <column name="path" output_ref="out_file" >
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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25 <move type="file">
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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26 <source>${path}</source>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_rep_set_aligned/${dbkey}</target>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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28 </move>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_rep_set_aligned/${dbkey}</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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30 <value_translation type="function">abspath</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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31 </column>
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32 </output>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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33 </data_table>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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34 <data_table name="qiime_taxonomy"> <!-- Defines a Data Table to be modified. -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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35 <output> <!-- Handle the output of the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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36 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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37 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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38 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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39 <column name="path" output_ref="out_file" >
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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40 <move type="file">
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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41 <source>${path}</source>
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42 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_taxonomy/${dbkey}</target>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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43 </move>
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44 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_taxonomy/${dbkey}</value_translation>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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45 <value_translation type="function">abspath</value_translation>
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46 </column>
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47 </output>
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48 </data_table>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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49 <data_table name="qiime_trees"> <!-- Defines a Data Table to be modified. -->
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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50 <output> <!-- Handle the output of the Data Manager Tool -->
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51 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
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52 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
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53 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
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54 <column name="path" output_ref="out_file" >
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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55 <move type="file">
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56 <source>${path}</source>
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57 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_trees/${dbkey}</target>
f8608fddfb23 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4934eb34300b5fa54d62d8b67e5b6e989e963ac9
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58 </move>
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59 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_trees/${dbkey}</value_translation>
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60 <value_translation type="function">abspath</value_translation>
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61 </column>
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62 </output>
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63 </data_table>
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64 </data_manager>
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65 </data_managers>