Mercurial > repos > iuc > data_manager_selection_background
comparison data_manager/data_manager_selection_background.xml @ 0:bb5794942b5e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
author | iuc |
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date | Fri, 20 Aug 2021 21:03:25 +0000 |
parents | |
children | e4f07770b340 |
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-1:000000000000 | 0:bb5794942b5e |
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1 <?xml version="1.0"?> | |
2 <tool id="data_manager_selection_background" name="Add background sequences" tool_type="manage_data" version="1.0.1"> | |
3 <description>for selection analysis</description> | |
4 <command detect_errors="exit_code"> | |
5 <![CDATA[ | |
6 python '$__tool_directory__/data_manager_selection_background.py' --out '$selection_background_json' | |
7 --dbkey '${dbkey}' | |
8 --label '${label}' | |
9 #if $data_source.source_selector == 'history': | |
10 --dataset '$data_source.dataset' | |
11 #else: | |
12 --uri '$data_source.uri' | |
13 #end if | |
14 ]]> | |
15 </command> | |
16 <inputs> | |
17 <param argument="--dbkey" type="text" label="ID for this entry" help="Enter a unique identifier, or leave blank for a randomly generated UUID" /> | |
18 <param argument="--label" type="text" label="Label for this entry" help="This will be displayed in the list of available backgrounds" /> | |
19 <conditional name="data_source"> | |
20 <param name="source_selector" type="select" label="Source for the data"> | |
21 <option value="uri">URL download</option> | |
22 <option value="history">Use a history dataset</option> | |
23 </param> | |
24 <when value="uri"> | |
25 <param argument="--uri" type="text" label="URI for the sequences" /> | |
26 </when> | |
27 <when value="history"> | |
28 <param argument="--dataset" type="data" format="fasta" /> | |
29 </when> | |
30 </conditional> | |
31 </inputs> | |
32 <outputs> | |
33 <data format="data_manager_json" name="selection_background_json" /> | |
34 </outputs> | |
35 <tests> | |
36 <test> | |
37 <param name="dbkey" value="CoV2-ORF6" /> | |
38 <param name="label" value="SARS-CoV-2: ORF6" /> | |
39 <param name="source_selector" value="history" /> | |
40 <param name="dataset" value="selection-in1.fa" /> | |
41 <output name="out_file" file="selection-out1.json" /> | |
42 </test> | |
43 </tests> | |
44 <help> | |
45 </help> | |
46 </tool> |