Mercurial > repos > iuc > data_manager_selection_background
diff data_manager/data_manager_selection_background.xml @ 0:bb5794942b5e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
author | iuc |
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date | Fri, 20 Aug 2021 21:03:25 +0000 |
parents | |
children | e4f07770b340 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager/data_manager_selection_background.xml Fri Aug 20 21:03:25 2021 +0000 @@ -0,0 +1,46 @@ +<?xml version="1.0"?> +<tool id="data_manager_selection_background" name="Add background sequences" tool_type="manage_data" version="1.0.1"> + <description>for selection analysis</description> + <command detect_errors="exit_code"> + <![CDATA[ + python '$__tool_directory__/data_manager_selection_background.py' --out '$selection_background_json' + --dbkey '${dbkey}' + --label '${label}' + #if $data_source.source_selector == 'history': + --dataset '$data_source.dataset' + #else: + --uri '$data_source.uri' + #end if + ]]> + </command> + <inputs> + <param argument="--dbkey" type="text" label="ID for this entry" help="Enter a unique identifier, or leave blank for a randomly generated UUID" /> + <param argument="--label" type="text" label="Label for this entry" help="This will be displayed in the list of available backgrounds" /> + <conditional name="data_source"> + <param name="source_selector" type="select" label="Source for the data"> + <option value="uri">URL download</option> + <option value="history">Use a history dataset</option> + </param> + <when value="uri"> + <param argument="--uri" type="text" label="URI for the sequences" /> + </when> + <when value="history"> + <param argument="--dataset" type="data" format="fasta" /> + </when> + </conditional> + </inputs> + <outputs> + <data format="data_manager_json" name="selection_background_json" /> + </outputs> + <tests> + <test> + <param name="dbkey" value="CoV2-ORF6" /> + <param name="label" value="SARS-CoV-2: ORF6" /> + <param name="source_selector" value="history" /> + <param name="dataset" value="selection-in1.fa" /> + <output name="out_file" file="selection-out1.json" /> + </test> + </tests> + <help> + </help> +</tool>