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annotate models/model_10.py @ 0:b856d3d95413 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
author iuc
date Mon, 09 Jan 2023 13:27:09 +0000
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b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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diff changeset
1 from tensorflow.keras import layers, models
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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4 def launch(input_layer, hidden_layers):
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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5 output = input_layer
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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6 for hidden_layer in hidden_layers:
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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7 output = hidden_layer(output)
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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8 return output
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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9
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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10
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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11 def model(length, kernel_size=10, filters=512, dense_ns=512):
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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12 forward_input = layers.Input(shape=(length, 4))
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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13 reverse_input = layers.Input(shape=(length, 4))
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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14 hidden_layers = [
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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diff changeset
15 layers.Conv1D(filters=filters, kernel_size=kernel_size),
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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16 layers.LeakyReLU(alpha=0.1),
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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17 layers.GlobalMaxPooling1D(),
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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18 layers.Dropout(0.1),
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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19 ]
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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20 forward_output = launch(forward_input, hidden_layers)
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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21 reverse_output = launch(reverse_input, hidden_layers)
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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22 output = layers.Concatenate()([forward_output, reverse_output])
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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23 output = layers.Dense(dense_ns, activation='relu')(output)
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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24 output = layers.Dropout(0.1)(output)
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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25 output = layers.Dense(2, activation='softmax')(output)
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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26 model_ = models.Model(inputs=[forward_input, reverse_input], outputs=output)
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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27 model_.compile(optimizer="adam", loss='binary_crossentropy', metrics='accuracy')
b856d3d95413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/decontaminator commit 3f8e87001f3dfe7d005d0765aeaa930225c93b72
iuc
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28 return model_