Mercurial > repos > iuc > deepvariant

annotate test-data/report.html @ 0:7608209110d3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
author iuc
date Mon, 06 Sep 2021 17:34:08 +0000
parents
children 98fe794d2ec0
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
1 <!DOCTYPE html>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
2 <html>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
3 <head>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
4 <style>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
5 .error {
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
6 color: red;
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
7 }
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
8 </style>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
9 <script type="text/javascript" src="https://storage.googleapis.com/deepvariant/lib/vega/vega@5"></script>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
10 <script type="text/javascript" src="https://storage.googleapis.com/deepvariant/lib/vega/vega-lite@3.4.0"></script>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
11 <script type="text/javascript" src="https://storage.googleapis.com/deepvariant/lib/vega/vega-embed@4"></script>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
12 </head>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
13 <body>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
14 <div id="vis"></div>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
15 <script>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
16 (function(vegaEmbed) {
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
17 var spec = {"config": {"view": {"continuousWidth": 400, "continuousHeight": 300}, "header": {"labelFontSize": 16, "titleFontSize": 20}, "title": {"fontSize": 20}}, "vconcat": [{"hconcat": [{"layer": [{"mark": "bar", "encoding": {"color": {"type": "nominal", "field": "label", "legend": null, "scale": {"domain": ["Biallelic_Insertion", "Biallelic_Deletion", "Biallelic_SNP", "Biallelic_MNP", "Multiallelic_Insertion", "Multiallelic_Deletion", "Multiallelic_SNP", "Multiallelic_Complex", "RefCall"], "scheme": "set1"}}, "tooltip": {"type": "quantitative", "field": "value", "format": ".4s"}, "x": {"type": "nominal", "axis": {"labelAngle": -45}, "field": "label", "sort": ["Biallelic_Insertion", "Biallelic_Deletion", "Biallelic_SNP", "Biallelic_MNP", "Multiallelic_Insertion", "Multiallelic_Deletion", "Multiallelic_SNP", "Multiallelic_Complex", "RefCall"], "title": null}, "y": {"type": "quantitative", "axis": {"format": "s", "title": "Count"}, "field": "value"}}}, {"mark": {"type": "text", "dy": -5}, "encoding": {"color": {"type": "nominal", "field": "label", "legend": null, "scale": {"domain": ["Biallelic_Insertion", "Biallelic_Deletion", "Biallelic_SNP", "Biallelic_MNP", "Multiallelic_Insertion", "Multiallelic_Deletion", "Multiallelic_SNP", "Multiallelic_Complex", "RefCall"], "scheme": "set1"}}, "text": {"type": "quantitative", "field": "value", "format": ".4s"}, "tooltip": {"type": "quantitative", "field": "value", "format": ".4s"}, "x": {"type": "nominal", "axis": {"labelAngle": -45}, "field": "label", "sort": ["Biallelic_Insertion", "Biallelic_Deletion", "Biallelic_SNP", "Biallelic_MNP", "Multiallelic_Insertion", "Multiallelic_Deletion", "Multiallelic_SNP", "Multiallelic_Complex", "RefCall"], "title": null}, "y": {"type": "quantitative", "axis": {"format": "s", "title": "Count"}, "field": "value"}}}], "data": {"name": "data-937b261a5c3b87122763fad938b49170"}, "height": 200, "title": "Variant types", "width": 400}, {"data": {"name": "data-b2d3f7df703b341956fcd700e0a250a9"}, "mark": {"type": "bar", "color": "#4a1486"}, "encoding": {"x": {"type": "quantitative", "field": "s", "title": "Depth"}, "x2": {"field": "e"}, "y": {"type": "quantitative", "axis": {"format": "s"}, "field": "c", "stack": true, "title": "Count"}}, "height": 200, "selection": {"selector001": {"type": "interval", "bind": "scales", "encodings": ["x"]}}, "title": "Depth", "width": 200}, {"data": {"name": "data-1fdc69f1e562b859232e2c7c67fa0330"}, "mark": {"type": "bar", "color": "#0c2c84"}, "encoding": {"x": {"type": "quantitative", "field": "s", "scale": {"domain": [0, 150]}, "title": "QUAL"}, "x2": {"field": "e"}, "y": {"type": "quantitative", "axis": {"format": "s"}, "field": "c", "stack": true, "title": "Count"}}, "height": 200, "selection": {"selector002": {"type": "interval", "bind": "scales", "encodings": ["x"]}}, "title": "Quality score", "width": 200}, {"data": {"name": "data-2eb03df08bc1de8ab65cb5fa9b73d2ca"}, "mark": {"type": "bar", "color": "#0c2c84"}, "encoding": {"x": {"type": "quantitative", "field": "s", "scale": {"domain": [0, 150]}, "title": "GQ"}, "x2": {"field": "e"}, "y": {"type": "quantitative", "axis": {"format": "s"}, "field": "c", "stack": true, "title": "Count"}}, "height": 200, "selection": {"selector003": {"type": "interval", "bind": "scales", "encodings": ["x"]}}, "title": "Genotype quality", "width": 200}], "resolve": {"scale": {"color": "independent"}}}, {"hconcat": [{"data": {"name": "data-3d9c2f5348720c594baf1c98c0318a7b"}, "facet": {"column": {"type": "nominal", "field": "GT", "sort": ["Ref (0/0)", "Het (0/x)", "Hom (x/x)"], "title": "Main genotypes"}}, "spec": {"layer": [{"mark": "bar", "encoding": {"x": {"type": "quantitative", "field": "s", "title": "VAF"}, "x2": {"field": "e"}, "y": {"type": "quantitative", "axis": {"format": "s"}, "field": "c", "stack": true, "title": "Count"}}}, {"mark": "rule", "encoding": {"x": {"type": "quantitative", "field": "l"}}}], "height": 200, "width": 200}, "resolve": {"scale": {"y": "independent"}}}, {"data": {"name": "data-c27c47333ad35eb954c1fa8cd921aa87"}, "mark": "bar", "encoding": {"column": {"type": "nominal", "field": "GT", "title": "Other genotypes"}, "x": {"type": "quantitative", "field": "s", "title": "VAF"}, "x2": {"field": "e"}, "y": {"type": "quantitative", "axis": {"format": "s"}, "field": "c", "stack": true, "title": "Count"}}, "height": 150, "resolve": {"scale": {"y": "independent"}}, "width": 150}]}, {"hconcat": [{"data": {"name": "data-da9c8bf99f8c1b3dd20c5e4c1ba410e4"}, "facet": {"column": {"type": "nominal", "field": "ref", "sort": ["A", "G", "T", "C"], "title": "Biallelic base changes from reference"}}, "spec": {"layer": [{"mark": "bar", "encoding": {"color": {"type": "nominal", "field": "alt", "legend": null, "scale": {"domain": ["A", "G", "T", "C"], "scheme": "category20"}, "sort": ["A", "G", "T", "C"]}, "tooltip": {"type": "quantitative", "field": "count", "format": ".4s"}, "x": {"type": "nominal", "field": "alt", "title": "to alt"}, "y": {"type": "quantitative", "axis": {"format": "s"}, "field": "count", "title": "Count"}}}, {"mark": {"type": "text", "dy": -5, "fontWeight": "bold"}, "encoding": {"color": {"type": "nominal", "field": "alt", "legend": null, "scale": {"domain": ["A", "G", "T", "C"], "scheme": "category20"}, "sort": ["A", "G", "T", "C"]}, "text": {"type": "nominal", "field": "alt"}, "tooltip": {"type": "quantitative", "field": "count", "format": ".4s"}, "x": {"type": "nominal", "field": "alt", "title": "to alt"}, "y": {"type": "quantitative", "axis": {"format": "s"}, "field": "count", "title": "Count"}}}], "height": 200, "width": 100}}, {"layer": [{"mark": "bar", "encoding": {"color": {"type": "nominal", "field": "label", "legend": null, "scale": {"domain": ["Transition", "Transversion"], "scheme": "teals"}, "sort": ["Transition", "Transversion"]}, "tooltip": {"type": "quantitative", "field": "value", "format": ".4s"}, "x": {"type": "nominal", "axis": {"labelAngle": 0, "title": null}, "field": "label", "sort": ["Transition", "Transversion"]}, "y": {"type": "quantitative", "axis": {"format": "s", "title": "Count"}, "field": "value"}}}, {"mark": {"type": "text", "dy": -5}, "encoding": {"color": {"type": "nominal", "field": "label", "legend": null, "scale": {"domain": ["Transition", "Transversion"], "scheme": "teals"}, "sort": ["Transition", "Transversion"]}, "text": {"type": "quantitative", "field": "value", "format": ".4s"}, "tooltip": {"type": "quantitative", "field": "value", "format": ".4s"}, "x": {"type": "nominal", "axis": {"labelAngle": 0, "title": null}, "field": "label", "sort": ["Transition", "Transversion"]}, "y": {"type": "quantitative", "axis": {"format": "s", "title": "Count"}, "field": "value"}}}], "data": {"name": "data-6b58572b26c468e413c4d8f4a9e8509b"}, "height": 200, "title": "Biallelic Ti/Tv ratio: 12.00", "width": 150}, {"vconcat": [{"mark": "bar", "encoding": {"color": {"type": "nominal", "field": "type", "scale": {"scheme": "set1"}, "sort": ["Insertion", "Deletion"]}, "x": {"type": "quantitative", "field": "s", "title": "size"}, "x2": {"field": "e"}, "y": {"type": "quantitative", "axis": {"format": "s"}, "field": "c", "title": "Count"}}, "height": 100, "selection": {"selector004": {"type": "interval", "bind": "scales", "encodings": ["x"]}}, "title": "Biallelic indel size distribution", "width": 400}, {"mark": "bar", "encoding": {"color": {"type": "nominal", "field": "type", "scale": {"scheme": "set1"}, "sort": ["Insertion", "Deletion"]}, "x": {"type": "quantitative", "field": "s", "title": "size"}, "x2": {"field": "e"}, "y": {"type": "quantitative", "axis": {"format": "s"}, "field": "c", "scale": {"base": 10, "type": "log"}, "title": "Count"}}, "height": 100, "selection": {"selector005": {"type": "interval", "bind": "scales", "encodings": ["x"]}}, "width": 400}], "data": {"name": "data-e694159267ddba70ae3dd0d73276928e"}, "resolve": {"scale": {"color": "shared"}}}], "resolve": {"scale": {"color": "independent"}}}], "spacing": 70, "title": "SRR8525881", "$schema": "https://vega.github.io/schema/vega-lite/v4.8.1.json", "datasets": {"data-937b261a5c3b87122763fad938b49170": [{"label": "Biallelic_SNP", "value": 13}, {"label": "Biallelic_Insertion", "value": 1}, {"label": "RefCall", "value": 1}], "data-b2d3f7df703b341956fcd700e0a250a9": [{"c": 1, "s": 11.5, "e": 12.5}, {"c": 1, "s": 99.5, "e": 100.5}, {"c": 1, "s": 200.5, "e": 201.5}, {"c": 1, "s": 212.5, "e": 213.5}, {"c": 1, "s": 234.5, "e": 235.5}, {"c": 1, "s": 237.5, "e": 238.5}, {"c": 1, "s": 257.5, "e": 258.5}, {"c": 1, "s": 383.5, "e": 384.5}, {"c": 1, "s": 638.5, "e": 639.5}, {"c": 1, "s": 652.5, "e": 653.5}, {"c": 1, "s": 668.5, "e": 669.5}, {"c": 1, "s": 727.5, "e": 728.5}, {"c": 1, "s": 736.5, "e": 737.5}, {"c": 1, "s": 776.5, "e": 777.5}, {"c": 1, "s": 819.5, "e": 820.5}], "data-1fdc69f1e562b859232e2c7c67fa0330": [{"s": 0.0, "e": 1.0, "c": 1}, {"s": 3.0, "e": 4.0, "c": 1}, {"s": 16.0, "e": 17.0, "c": 1}, {"s": 20.0, "e": 21.0, "c": 1}, {"s": 21.0, "e": 22.0, "c": 1}, {"s": 23.0, "e": 24.0, "c": 2}, {"s": 25.0, "e": 26.0, "c": 1}, {"s": 27.0, "e": 28.0, "c": 1}, {"s": 28.0, "e": 29.0, "c": 1}, {"s": 31.0, "e": 32.0, "c": 1}, {"s": 32.0, "e": 33.0, "c": 1}, {"s": 33.0, "e": 34.0, "c": 1}, {"s": 39.0, "e": 40.0, "c": 1}, {"s": 41.0, "e": 42.0, "c": 1}], "data-2eb03df08bc1de8ab65cb5fa9b73d2ca": [{"c": 1, "s": 2.5, "e": 3.5}, {"c": 1, "s": 15.5, "e": 16.5}, {"c": 1, "s": 19.5, "e": 20.5}, {"c": 1, "s": 20.5, "e": 21.5}, {"c": 2, "s": 23.5, "e": 24.5}, {"c": 1, "s": 24.5, "e": 25.5}, {"c": 1, "s": 26.5, "e": 27.5}, {"c": 1, "s": 27.5, "e": 28.5}, {"c": 2, "s": 31.5, "e": 32.5}, {"c": 1, "s": 32.5, "e": 33.5}, {"c": 1, "s": 36.5, "e": 37.5}, {"c": 2, "s": 38.5, "e": 39.5}], "data-3d9c2f5348720c594baf1c98c0318a7b": [{"s": 0.0, "e": 0.02, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.02, "e": 0.04, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.04, "e": 0.06, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.06, "e": 0.08, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.08, "e": 0.1, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.1, "e": 0.12, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.12, "e": 0.14, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.14, "e": 0.16, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.16, "e": 0.18, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.18, "e": 0.2, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.2, "e": 0.22, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.22, "e": 0.24, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.24, "e": 0.26, "c": 1, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.26, "e": 0.28, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.28, "e": 0.3, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.3, "e": 0.32, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.32, "e": 0.34, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.34, "e": 0.36, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.36, "e": 0.38, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.38, "e": 0.4, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.4, "e": 0.42, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.42, "e": 0.44, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.44, "e": 0.46, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.46, "e": 0.48, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.48, "e": 0.5, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.5, "e": 0.52, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.52, "e": 0.54, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.54, "e": 0.56, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.56, "e": 0.58, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.58, "e": 0.6, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.6, "e": 0.62, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.62, "e": 0.64, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.64, "e": 0.66, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.66, "e": 0.68, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.68, "e": 0.7, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.7, "e": 0.72, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.72, "e": 0.74, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.74, "e": 0.76, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.76, "e": 0.78, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.78, "e": 0.8, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.8, "e": 0.82, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.82, "e": 0.84, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.84, "e": 0.86, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.86, "e": 0.88, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.88, "e": 0.9, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.9, "e": 0.92, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.92, "e": 0.94, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.94, "e": 0.96, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.96, "e": 0.98, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.98, "e": 1.0, "c": 0, "GT": "Ref (0/0)", "g": "main", "l": 0.0}, {"s": 0.0, "e": 0.5, "c": 0, "GT": "Het (0/x)", "g": "main", "l": 0.5}, {"s": 0.5, "e": 1.0, "c": 0, "GT": "Het (0/x)", "g": "main", "l": 0.5}, {"s": 0.0, "e": 0.02, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.02, "e": 0.04, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.04, "e": 0.06, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.06, "e": 0.08, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.08, "e": 0.1, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.1, "e": 0.12, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.12, "e": 0.14, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.14, "e": 0.16, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.16, "e": 0.18, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.18, "e": 0.2, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.2, "e": 0.22, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.22, "e": 0.24, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.24, "e": 0.26, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.26, "e": 0.28, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.28, "e": 0.3, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.3, "e": 0.32, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.32, "e": 0.34, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.34, "e": 0.36, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.36, "e": 0.38, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.38, "e": 0.4, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.4, "e": 0.42, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.42, "e": 0.44, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.44, "e": 0.46, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.46, "e": 0.48, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.48, "e": 0.5, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.5, "e": 0.52, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.52, "e": 0.54, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.54, "e": 0.56, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.56, "e": 0.58, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.58, "e": 0.6, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.6, "e": 0.62, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.62, "e": 0.64, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.64, "e": 0.66, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.66, "e": 0.68, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.68, "e": 0.7, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.7, "e": 0.72, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.72, "e": 0.74, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.74, "e": 0.76, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.76, "e": 0.78, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.78, "e": 0.8, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.8, "e": 0.82, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.82, "e": 0.84, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.84, "e": 0.86, "c": 1, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.86, "e": 0.88, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.88, "e": 0.9, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.9, "e": 0.92, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.92, "e": 0.94, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.94, "e": 0.96, "c": 0, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.96, "e": 0.98, "c": 3, "GT": "Hom (x/x)", "g": "main", "l": 1.0}, {"s": 0.98, "e": 1.0, "c": 10, "GT": "Hom (x/x)", "g": "main", "l": 1.0}], "data-c27c47333ad35eb954c1fa8cd921aa87": [{"s": 0.0, "e": 0.5, "c": 0, "GT": "Uncalled (./.)", "g": "others", "l": null}, {"s": 0.5, "e": 1.0, "c": 0, "GT": "Uncalled (./.)", "g": "others", "l": null}, {"s": 0.0, "e": 0.5, "c": 0, "GT": "Het - two variants (x/y)", "g": "others", "l": null}, {"s": 0.5, "e": 1.0, "c": 0, "GT": "Het - two variants (x/y)", "g": "others", "l": null}], "data-da9c8bf99f8c1b3dd20c5e4c1ba410e4": [{"ref": "G", "alt": "A", "count": 4}, {"ref": "T", "alt": "C", "count": 3}, {"ref": "A", "alt": "G", "count": 2}, {"ref": "C", "alt": "T", "count": 3}, {"ref": "G", "alt": "T", "count": 1}], "data-6b58572b26c468e413c4d8f4a9e8509b": [{"label": "Transition", "value": 12}, {"label": "Transversion", "value": 1}], "data-e694159267ddba70ae3dd0d73276928e": [{"c": 1, "s": 0.5, "e": 1.5, "type": "Insertion"}]}};
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
18 var embedOpt = {"downloadFileName": "output.visual_report", "mode": "vega-lite"};
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
19
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
20 function showError(el, error){
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
21 el.innerHTML = ('<div class="error" style="color:red;">'
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
22 + '<p>JavaScript Error: ' + error.message + '</p>'
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
23 + "<p>This usually means there's a typo in your chart specification. "
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
24 + "See the javascript console for the full traceback.</p>"
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
25 + '</div>');
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
26 throw error;
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
27 }
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
28 const el = document.getElementById('vis');
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
29 vegaEmbed("#vis", spec, embedOpt)
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
30 .catch(error => showError(el, error));
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
31 })(vegaEmbed);
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
32
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
33 </script>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
34 </body>
7608209110d3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit e46feb5432b28a9360a1d4e8a6618e6ed91008fe"
iuc
parents:
diff changeset
35 </html>