Mercurial > repos > iuc > describe_samples
comparison describe_samples.xml @ 18:57f477b57c35 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
author | iuc |
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date | Tue, 11 Apr 2023 19:56:55 +0000 |
parents | 0f294e370b95 |
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17:e3b16fd7dd08 | 18:57f477b57c35 |
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1 <?xml version="1.0"?> | 1 <tool id="describe_samples" name="Describe samples" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> |
2 <tool id="describe_samples" name="Describe samples" version="@WRAPPER_VERSION@"> | |
3 <description>and replicates</description> | 2 <description>and replicates</description> |
4 <macros> | 3 <macros> |
5 <import>macros.xml</import> | 4 <import>macros.xml</import> |
6 </macros> | 5 </macros> |
7 <expand macro="bio_tools"/> | 6 <expand macro="bio_tools"/> |
8 <command detect_errors="aggressive"><![CDATA[ | 7 <command detect_errors="aggressive"><![CDATA[ |
9 cp $sample_list $output | 8 mv '$sample_list' '$output' |
10 ]]></command> | 9 ]]></command> |
11 <configfiles> | 10 <configfiles> |
12 <configfile name="sample_list"><![CDATA[#for $sample in $samples: | 11 <configfile name="sample_list"><![CDATA[#for $sample in $samples: |
13 $sample.condition $sample.name | 12 $sample.condition $sample.name |
14 #end for]]></configfile> | 13 #end for]]></configfile> |
15 </configfiles> | 14 </configfiles> |
16 <inputs> | 15 <inputs> |
17 <repeat name="samples" title="Samples"> | 16 <repeat name="samples" title="Samples"> |
18 <param name="name" type="text" label="Full sample name" help="e.g. CondA_replicate1" optional="False" /> | 17 <param name="name" type="text" label="Full sample name" help="e.g. CondA_replicate1" /> |
19 <param name="condition" type="text" label="Condition" help="e.g. ConditionA" optional="False" /> | 18 <param name="condition" type="text" label="Condition" help="e.g. ConditionA" /> |
20 </repeat> | 19 </repeat> |
21 </inputs> | 20 </inputs> |
22 <outputs> | 21 <outputs> |
23 <data format="tabular" name="output"/> | 22 <data format="tabular" name="output"/> |
24 </outputs> | 23 </outputs> |
60 ConditionC CondC_replicate2 | 59 ConditionC CondC_replicate2 |
61 ----------- ---------------- | 60 ----------- ---------------- |
62 ConditionC CondC_replicate3 | 61 ConditionC CondC_replicate3 |
63 =========== ================ | 62 =========== ================ |
64 | 63 |
65 IThe output file can be used in the tools 'RNASeq samples quality check for transcript quantification' and 'Differential expression analysis'. | 64 The output file can be used in the tools 'RNASeq samples quality check for transcript quantification' and 'Differential expression analysis'. |
66 The names in column 2 must match the names given to the datasets in your history. | 65 The names in column 2 must match the names given to the datasets in your history. |
67 ]]></help> | 66 ]]></help> |
68 <expand macro="citation"/> | 67 <expand macro="citation"/> |
69 </tool> | 68 </tool> |