diff describe_samples.xml @ 18:57f477b57c35 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
author iuc
date Tue, 11 Apr 2023 19:56:55 +0000
parents 0f294e370b95
children
line wrap: on
line diff
--- a/describe_samples.xml	Sun Dec 19 16:24:50 2021 +0000
+++ b/describe_samples.xml	Tue Apr 11 19:56:55 2023 +0000
@@ -1,12 +1,11 @@
-<?xml version="1.0"?>
-<tool id="describe_samples" name="Describe samples" version="@WRAPPER_VERSION@">
+<tool id="describe_samples" name="Describe samples" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
     <description>and replicates</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="bio_tools"/>
     <command detect_errors="aggressive"><![CDATA[
-        cp $sample_list $output
+        mv '$sample_list' '$output'
       ]]></command>
     <configfiles>
         <configfile name="sample_list"><![CDATA[#for $sample in $samples:
@@ -15,8 +14,8 @@
     </configfiles>
     <inputs>
         <repeat name="samples" title="Samples">
-            <param name="name" type="text" label="Full sample name" help="e.g. CondA_replicate1" optional="False" />
-            <param name="condition" type="text" label="Condition" help="e.g. ConditionA" optional="False" />
+            <param name="name" type="text" label="Full sample name" help="e.g. CondA_replicate1" />
+            <param name="condition" type="text" label="Condition" help="e.g. ConditionA" />
         </repeat>
     </inputs>
     <outputs>
@@ -62,7 +61,7 @@
         ConditionC  CondC_replicate3
         =========== ================
 
-        IThe output file can be used in the tools 'RNASeq samples quality check for transcript quantification' and 'Differential expression analysis'.
+        The output file can be used in the tools 'RNASeq samples quality check for transcript quantification' and 'Differential expression analysis'.
         The names in column 2 must match the names given to the datasets in your history.
     ]]></help>
     <expand macro="citation"/>