Mercurial > repos > iuc > deseq2

diff test-data/sailfish_quant_result2.tab @ 6:4939397c4706 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 3bc8d91ee546682ef8e9303bd1044bb14cf21b07
author iuc
date Wed, 09 Nov 2016 17:00:31 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sailfish_quant_result2.tab	Wed Nov 09 17:00:31 2016 -0500
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+# sailfish (quasi-mapping-based) v0.7.6
+# [ program ] => sailfish 
+# [ command ] => quant 
+# [ index ] => { ./index_dir }
+# [ mates1 ] => { ./mate1.fastq }
+# [ mates2 ] => { ./mate2.fastq }
+# [ libType ] => { IU }
+# [ output ] => { ./ }
+# [ biasCorrect ] => { }
+# [ threads ] => { 1 }
+# [ fldMean ] => { 200 }
+# [ fldSD ] => { 80 }
+# [ maxReadOcc ] => { 200 }
+# [ maxFragLen ] => { 1000 }
+# [ txpAggregationKey ] => { gene_id }
+# [ mapping rate ] => { 100% }
+# Name	Length	TPM	NumReads
+NM_001168316	2283	1239.5	159.361
+NM_174914	2385	11125	1505.04
+NR_031764	1853	1025.5	100.595
+NM_004503	1681	3619.8	320.806
+NM_006897	1541	8224.3	660
+NM_014212	2037	485.08	60
+NM_014620	2300	4513.7	580.838
+NM_017409	1959	433.19	45
+NM_017410	2396	3219.5	40
+NM_018953	1612	2616.3	220
+NM_022658	2288	37883	4880
+NM_153633	1666	4057.4	360.074
+NM_153693	2072	643.57	70.2815
+NM_173860	849	2521	960
+NR_003084	1640	1000	10