Mercurial > repos > iuc > deseq2
changeset 3:248e9c78346e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit f33b04533bca91242b8a0a4077e1d593f5a874e0
| author | iuc |
|---|---|
| date | Tue, 19 Apr 2016 18:10:31 -0400 |
| parents | afe2a77c5900 |
| children | 8702e49e68b6 |
| files | deseq2.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/deseq2.xml Wed Dec 02 17:40:45 2015 -0500 +++ b/deseq2.xml Tue Apr 19 18:10:31 2016 -0400 @@ -59,7 +59,7 @@ </command> <inputs> <repeat name="rep_factorName" title="Factor" min="1"> - <param name="factorName" type="text" value="FactorName" label="Specify a factor name" + <param name="factorName" type="text" value="FactorName" label="Specify a factor name" help="Only letters, numbers and underscores will be retained in this field"> <sanitizer> <valid initial="string.letters,string.digits"><add value="_" /></valid> @@ -105,7 +105,7 @@ </data> <collection name="split_output" type="list" label="DESeq2 result files on ${on_string}"> <filter>many_contrasts is True</filter> - <discover_datasets pattern="vs" visible="true"/> + <discover_datasets pattern="None.(?P<designation>.+_vs_.+)" format="tabular" directory="." visible="false"/> </collection> <data format="pdf" name="plots" label="DESeq2 plots on ${on_string}"> <filter>pdf == True</filter> @@ -133,7 +133,7 @@ <![CDATA[ .. class:: infomark -**What it does** +**What it does** Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution @@ -145,7 +145,7 @@ The following table gives some examples of factors and their levels: ========= ============== =============== -Factor Factor level 1 Factor level 2 +Factor Factor level 1 Factor level 2 --------- -------------- --------------- Treatment Treated Untreated --------- -------------- ---------------