Mercurial > repos > iuc > dexseq
comparison plotdexseq.xml @ 10:df929f257179 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit 2ea27822b171dbf519509dc1da150c8ccee2a140
author | iuc |
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date | Tue, 04 Apr 2023 08:25:51 +0000 |
parents | b47c006d90c5 |
children |
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9:b47c006d90c5 | 10:df929f257179 |
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1 <tool id="plotdexseq" name="plotDEXSeq" version="@TOOL_VERSION@.1" profile="@PROFILE@"> | 1 <tool id="plotdexseq" name="plotDEXSeq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
2 <description>Visualization of the per gene DEXSeq results</description> | 2 <description>Visualization of the per gene DEXSeq results</description> |
3 <xrefs> | |
4 <xref type="bio.tools">dexseq</xref> | |
5 </xrefs> | |
6 <macros> | 3 <macros> |
7 <import>macros.xml</import> | 4 <import>macros.xml</import> |
8 </macros> | 5 </macros> |
9 <expand macro="requirements"> | 6 <expand macro="xrefs"/> |
10 <requirement type="package" version="1.20.2">r-getopt</requirement> | 7 <expand macro="requirements"/> |
11 </expand> | |
12 <version_command><![CDATA[ | 8 <version_command><![CDATA[ |
13 echo $(R --version | grep version | grep -v GNU)", DEXSeq version" $(R --vanilla --slave -e "library(DEXSeq); cat(sessionInfo()\$otherPkgs\$DEXSeq\$Version)" 2> /dev/null | grep -v -i "WARNING: ")" (depends on DESeq2 "$(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")")" | 9 echo $(R --version | grep version | grep -v GNU)", DEXSeq version" $(R --vanilla --slave -e "library(DEXSeq); cat(sessionInfo()\$otherPkgs\$DEXSeq\$Version)" 2> /dev/null | grep -v -i "WARNING: ")" (depends on DESeq2 "$(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")")" |
14 ]]></version_command> | 10 ]]></version_command> |
15 <command detect_errors="exit_code"><![CDATA[ | 11 <command detect_errors="exit_code"><![CDATA[ |
16 Rscript '$__tool_directory__/plotdexseq.R' | 12 Rscript '$__tool_directory__/plotdexseq.R' |