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comparison plotdexseq.xml @ 10:df929f257179 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit 2ea27822b171dbf519509dc1da150c8ccee2a140
author iuc
date Tue, 04 Apr 2023 08:25:51 +0000
parents b47c006d90c5
children
comparison
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9:b47c006d90c5 10:df929f257179
1 <tool id="plotdexseq" name="plotDEXSeq" version="@TOOL_VERSION@.1" profile="@PROFILE@"> 1 <tool id="plotdexseq" name="plotDEXSeq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>Visualization of the per gene DEXSeq results</description> 2 <description>Visualization of the per gene DEXSeq results</description>
3 <xrefs>
4 <xref type="bio.tools">dexseq</xref>
5 </xrefs>
6 <macros> 3 <macros>
7 <import>macros.xml</import> 4 <import>macros.xml</import>
8 </macros> 5 </macros>
9 <expand macro="requirements"> 6 <expand macro="xrefs"/>
10 <requirement type="package" version="1.20.2">r-getopt</requirement> 7 <expand macro="requirements"/>
11 </expand>
12 <version_command><![CDATA[ 8 <version_command><![CDATA[
13 echo $(R --version | grep version | grep -v GNU)", DEXSeq version" $(R --vanilla --slave -e "library(DEXSeq); cat(sessionInfo()\$otherPkgs\$DEXSeq\$Version)" 2> /dev/null | grep -v -i "WARNING: ")" (depends on DESeq2 "$(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")")" 9 echo $(R --version | grep version | grep -v GNU)", DEXSeq version" $(R --vanilla --slave -e "library(DEXSeq); cat(sessionInfo()\$otherPkgs\$DEXSeq\$Version)" 2> /dev/null | grep -v -i "WARNING: ")" (depends on DESeq2 "$(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")")"
14 ]]></version_command> 10 ]]></version_command>
15 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
16 Rscript '$__tool_directory__/plotdexseq.R' 12 Rscript '$__tool_directory__/plotdexseq.R'