Mercurial > repos > iuc > dexseq

diff plotdexseq.xml @ 10:df929f257179 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit 2ea27822b171dbf519509dc1da150c8ccee2a140
author iuc
date Tue, 04 Apr 2023 08:25:51 +0000
parents b47c006d90c5
children
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--- a/plotdexseq.xml	Tue May 03 20:23:18 2022 +0000
+++ b/plotdexseq.xml	Tue Apr 04 08:25:51 2023 +0000
@@ -1,14 +1,10 @@
-<tool id="plotdexseq" name="plotDEXSeq" version="@TOOL_VERSION@.1" profile="@PROFILE@">
+<tool id="plotdexseq" name="plotDEXSeq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Visualization of the per gene DEXSeq results</description>
-    <xrefs>
-        <xref type="bio.tools">dexseq</xref>
-    </xrefs>
     <macros>
         <import>macros.xml</import>
     </macros>
-    <expand macro="requirements">
-        <requirement type="package" version="1.20.2">r-getopt</requirement>
-    </expand>
+    <expand macro="xrefs"/>
+    <expand macro="requirements"/>
     <version_command><![CDATA[
 echo $(R --version | grep version | grep -v GNU)", DEXSeq version" $(R --vanilla --slave -e "library(DEXSeq); cat(sessionInfo()\$otherPkgs\$DEXSeq\$Version)" 2> /dev/null | grep -v -i "WARNING: ")" (depends on DESeq2 "$(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")")"
     ]]></version_command>