view test-data/flattened.gtf @ 11:9a7c5b6d8f1e draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit 0ccfadf8ac4bc6514836c4efe6f605973a08d1ed
author iuc
date Tue, 02 Apr 2024 12:59:54 +0000
parents 251393b72616
children
line wrap: on
line source

X	dexseq_prepare_annotation.py	aggregate_gene	18880	19093	.	+	.	gene_id "FBgn0058469"
X	dexseq_prepare_annotation.py	exonic_part	18880	19093	.	+	.	transcripts "FBtr0307364"; exonic_part_number "001"; gene_id "FBgn0058469"
X	dexseq_prepare_annotation.py	aggregate_gene	20757	23268	.	-	.	gene_id "FBgn0025837"
X	dexseq_prepare_annotation.py	exonic_part	20757	21796	.	-	.	transcripts "FBtr0112921+FBtr0307094+FBtr0307095"; exonic_part_number "001"; gene_id "FBgn0025837"
X	dexseq_prepare_annotation.py	exonic_part	21882	22646	.	-	.	transcripts "FBtr0112921+FBtr0307094+FBtr0307095"; exonic_part_number "002"; gene_id "FBgn0025837"
X	dexseq_prepare_annotation.py	exonic_part	22742	22749	.	-	.	transcripts "FBtr0307094"; exonic_part_number "003"; gene_id "FBgn0025837"
X	dexseq_prepare_annotation.py	exonic_part	22750	22883	.	-	.	transcripts "FBtr0307094+FBtr0307095"; exonic_part_number "004"; gene_id "FBgn0025837"
X	dexseq_prepare_annotation.py	exonic_part	23013	23076	.	-	.	transcripts "FBtr0112921+FBtr0307094+FBtr0307095"; exonic_part_number "005"; gene_id "FBgn0025837"
X	dexseq_prepare_annotation.py	exonic_part	23077	23268	.	-	.	transcripts "FBtr0307095"; exonic_part_number "006"; gene_id "FBgn0025837"
X	dexseq_prepare_annotation.py	aggregate_gene	23840	36727	.	+	.	gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	23840	23982	.	+	.	transcripts "FBtr0112919+FBtr0112920"; exonic_part_number "001"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	25308	25804	.	+	.	transcripts "FBtr0112919+FBtr0112920"; exonic_part_number "002"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	27422	28284	.	+	.	transcripts "FBtr0302200"; exonic_part_number "003"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	29194	29771	.	+	.	transcripts "FBtr0112919+FBtr0302200+FBtr0112920"; exonic_part_number "004"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	29890	30514	.	+	.	transcripts "FBtr0112919+FBtr0302200+FBtr0112920"; exonic_part_number "005"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	30656	30951	.	+	.	transcripts "FBtr0112919+FBtr0302200+FBtr0112920"; exonic_part_number "006"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	31021	31147	.	+	.	transcripts "FBtr0112919+FBtr0302200+FBtr0112920"; exonic_part_number "007"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	32442	32462	.	+	.	transcripts "FBtr0112919+FBtr0112920"; exonic_part_number "008"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	33022	33120	.	+	.	transcripts "FBtr0112919+FBtr0302200+FBtr0112920"; exonic_part_number "009"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	33643	34647	.	+	.	transcripts "FBtr0112919+FBtr0302200+FBtr0112920"; exonic_part_number "010"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	34709	35092	.	+	.	transcripts "FBtr0112919+FBtr0302200+FBtr0112920"; exonic_part_number "011"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	35157	35317	.	+	.	transcripts "FBtr0112919+FBtr0302200+FBtr0112920"; exonic_part_number "012"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	35318	35433	.	+	.	transcripts "FBtr0302200"; exonic_part_number "013"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	35454	35593	.	+	.	transcripts "FBtr0112919+FBtr0112920"; exonic_part_number "014"; gene_id "FBgn0025836"
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X	dexseq_prepare_annotation.py	exonic_part	36168	36237	.	+	.	transcripts "FBtr0112919"; exonic_part_number "017"; gene_id "FBgn0025836"
X	dexseq_prepare_annotation.py	exonic_part	36238	36727	.	+	.	transcripts "FBtr0112919+FBtr0112920"; exonic_part_number "018"; gene_id "FBgn0025836"
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X	dexseq_prepare_annotation.py	exonic_part	29772	29796	.	+	.	transcripts "FBtr0309717+FBtr0309716"; exonic_part_number "001"; gene_id "FBgn0263567"
X	dexseq_prepare_annotation.py	exonic_part	29797	29889	.	+	.	transcripts "FBtr0309716"; exonic_part_number "002"; gene_id "FBgn0263567"
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X	dexseq_prepare_annotation.py	exonic_part	48078	48311	.	-	.	transcripts "FBtr0332568"; exonic_part_number "001"; gene_id "FBgn0264445"
X	dexseq_prepare_annotation.py	exonic_part	48370	48666	.	-	.	transcripts "FBtr0332568"; exonic_part_number "002"; gene_id "FBgn0264445"
X	dexseq_prepare_annotation.py	aggregate_gene	72458	96056	.	+	.	gene_id "FBgn0029128"
X	dexseq_prepare_annotation.py	exonic_part	72458	72791	.	+	.	transcripts "FBtr0100136+FBtr0100135"; exonic_part_number "001"; gene_id "FBgn0029128"
X	dexseq_prepare_annotation.py	exonic_part	84573	84613	.	+	.	transcripts "FBtr0100135"; exonic_part_number "002"; gene_id "FBgn0029128"
X	dexseq_prepare_annotation.py	exonic_part	93279	94419	.	+	.	transcripts "FBtr0100136+FBtr0100135"; exonic_part_number "003"; gene_id "FBgn0029128"
X	dexseq_prepare_annotation.py	exonic_part	94481	94656	.	+	.	transcripts "FBtr0100136+FBtr0100135"; exonic_part_number "004"; gene_id "FBgn0029128"
X	dexseq_prepare_annotation.py	exonic_part	94719	94992	.	+	.	transcripts "FBtr0100136+FBtr0100135"; exonic_part_number "005"; gene_id "FBgn0029128"
X	dexseq_prepare_annotation.py	exonic_part	95056	95350	.	+	.	transcripts "FBtr0100136+FBtr0100135"; exonic_part_number "006"; gene_id "FBgn0029128"
X	dexseq_prepare_annotation.py	exonic_part	95438	95553	.	+	.	transcripts "FBtr0100136+FBtr0100135"; exonic_part_number "007"; gene_id "FBgn0029128"
X	dexseq_prepare_annotation.py	exonic_part	95614	96056	.	+	.	transcripts "FBtr0100136+FBtr0100135"; exonic_part_number "008"; gene_id "FBgn0029128"
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X	dexseq_prepare_annotation.py	exonic_part	138094	138100	.	-	.	transcripts "FBtr0070107"; exonic_part_number "001"; gene_id "FBgn0040373"
X	dexseq_prepare_annotation.py	exonic_part	138101	139379	.	-	.	transcripts "FBtr0070107+FBtr0070108"; exonic_part_number "002"; gene_id "FBgn0040373"
X	dexseq_prepare_annotation.py	exonic_part	139445	139611	.	-	.	transcripts "FBtr0070107+FBtr0070108"; exonic_part_number "003"; gene_id "FBgn0040373"
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X	dexseq_prepare_annotation.py	exonic_part	139713	139889	.	-	.	transcripts "FBtr0070107+FBtr0070108"; exonic_part_number "005"; gene_id "FBgn0040373"
X	dexseq_prepare_annotation.py	aggregate_gene	140011	148683	.	+	.	gene_id "FBgn0040372"
X	dexseq_prepare_annotation.py	exonic_part	140011	141629	.	+	.	transcripts "FBtr0332992+FBtr0070063"; exonic_part_number "001"; gene_id "FBgn0040372"
X	dexseq_prepare_annotation.py	exonic_part	142415	144271	.	+	.	transcripts "FBtr0332992+FBtr0070063"; exonic_part_number "002"; gene_id "FBgn0040372"
X	dexseq_prepare_annotation.py	exonic_part	144327	144568	.	+	.	transcripts "FBtr0332992+FBtr0070063"; exonic_part_number "003"; gene_id "FBgn0040372"
X	dexseq_prepare_annotation.py	exonic_part	144659	145026	.	+	.	transcripts "FBtr0332992+FBtr0070063"; exonic_part_number "004"; gene_id "FBgn0040372"
X	dexseq_prepare_annotation.py	exonic_part	145083	145324	.	+	.	transcripts "FBtr0332992+FBtr0070063"; exonic_part_number "005"; gene_id "FBgn0040372"
X	dexseq_prepare_annotation.py	exonic_part	145384	145574	.	+	.	transcripts "FBtr0332992+FBtr0070063"; exonic_part_number "006"; gene_id "FBgn0040372"
X	dexseq_prepare_annotation.py	exonic_part	145575	145634	.	+	.	transcripts "FBtr0332992"; exonic_part_number "007"; gene_id "FBgn0040372"
X	dexseq_prepare_annotation.py	exonic_part	145635	145796	.	+	.	transcripts "FBtr0332992+FBtr0070063"; exonic_part_number "008"; gene_id "FBgn0040372"
X	dexseq_prepare_annotation.py	exonic_part	145856	146393	.	+	.	transcripts "FBtr0332992+FBtr0070063"; exonic_part_number "009"; gene_id "FBgn0040372"
X	dexseq_prepare_annotation.py	exonic_part	146463	146836	.	+	.	transcripts "FBtr0332992+FBtr0070063"; exonic_part_number "010"; gene_id "FBgn0040372"
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X	dexseq_prepare_annotation.py	exonic_part	393314	393483	.	+	.	transcripts "FBtr0070086+FBtr0070087+FBtr0070081"; exonic_part_number "002"; gene_id "FBgn0004648"
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X	dexseq_prepare_annotation.py	exonic_part	394878	395007	.	+	.	transcripts "FBtr0070083+FBtr0290017"; exonic_part_number "004"; gene_id "FBgn0004648"
X	dexseq_prepare_annotation.py	exonic_part	396018	396253	.	+	.	transcripts "FBtr0290017+FBtr0290016+FBtr0070086+FBtr0070087+FBtr0070084+FBtr0070085+FBtr0070083+FBtr0070081"; exonic_part_number "005"; gene_id "FBgn0004648"
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X	dexseq_prepare_annotation.py	exonic_part	396970	398365	.	+	.	transcripts "FBtr0070086+FBtr0070085"; exonic_part_number "008"; gene_id "FBgn0004648"
X	dexseq_prepare_annotation.py	exonic_part	398701	398818	.	+	.	transcripts "FBtr0290017+FBtr0290016+FBtr0070087+FBtr0070084+FBtr0070083+FBtr0070081"; exonic_part_number "009"; gene_id "FBgn0004648"
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X	dexseq_prepare_annotation.py	exonic_part	403451	403467	.	+	.	transcripts "FBtr0070088"; exonic_part_number "001"; gene_id "FBgn0023535"
X	dexseq_prepare_annotation.py	exonic_part	403468	403749	.	+	.	transcripts "FBtr0333318+FBtr0070088"; exonic_part_number "002"; gene_id "FBgn0023535"
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X	dexseq_prepare_annotation.py	exonic_part	404208	404394	.	+	.	transcripts "FBtr0333318+FBtr0070088"; exonic_part_number "004"; gene_id "FBgn0023535"
X	dexseq_prepare_annotation.py	exonic_part	420339	420534	.	+	.	transcripts "FBtr0333318"; exonic_part_number "005"; gene_id "FBgn0023535"
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X	dexseq_prepare_annotation.py	exonic_part	422062	422067	.	+	.	transcripts "FBtr0333318"; exonic_part_number "008"; gene_id "FBgn0023535"
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