Mercurial > repos > iuc > dimet_enrichment_plot

comparison macros.xml @ 6:be19aa1df5af draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5
author iuc
date Fri, 21 Jun 2024 18:51:03 +0000
parents 5c12e5d57e53
children 916bfd9924ff
comparison
equal deleted inserted replaced
5:5c12e5d57e53 6:be19aa1df5af
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">0.2.4</token> 2 <token name="@TOOL_VERSION@">0.2.4</token>
3 <token name="@VERSION_SUFFIX@">2</token> 3 <token name="@VERSION_SUFFIX@">3</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">dimet</requirement> 6 <requirement type="package" version="@TOOL_VERSION@">dimet</requirement>
7 </requirements> 7 </requirements>
8 </xml> 8 </xml>
596 ln -s '$me_or_frac_contrib_file' data/me_or_frac_contrib.csv && 596 ln -s '$me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
597 #end if 597 #end if
598 598
599 ]]></token> 599 ]]></token>
600 <token name="@INIT_CONFIG@"><![CDATA[ 600 <token name="@INIT_CONFIG@"><![CDATA[
601 mkdir -p '$__new_file_path__/config' && 601 mkdir -p 'config' &&
602 touch '$__new_file_path__/config/config.yaml' && 602 touch 'config/config.yaml' &&
603 ]]></token> 603 ]]></token>
604 <token name="@REMOVE_CONFIG@"><![CDATA[ 604 <token name="@REMOVE_CONFIG@"><![CDATA[
605 && rm -r '$__new_file_path__/config' 605 && rm -r 'config'
606 ]]></token> 606 ]]></token>
607 <token name="@INIT_ABUNDANCE_PLOT@"><![CDATA[ 607 <token name="@INIT_ABUNDANCE_PLOT@"><![CDATA[
608 608
609 mkdir -p data && 609 mkdir -p data &&
610
611 #if $metadata_path: 610 #if $metadata_path:
612 ln -s '$metadata_path' data/metadata.csv && 611 ln -s '$metadata_path' data/metadata.csv &&
613 #end if 612 #end if
614 #if $abundance_file: 613 #if $abundance_file:
615 ln -s '$abundance_file' data/abundance.csv && 614 ln -s '$abundance_file' data/abundance.csv &&