Mercurial > repos > iuc > dimet_enrichment_plot

changeset 6:be19aa1df5af draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5
author iuc
date Fri, 21 Jun 2024 18:51:03 +0000
parents 5c12e5d57e53
children 916bfd9924ff
files dimet_enrichment_plot.xml macros.xml
diffstat 2 files changed, 6 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/dimet_enrichment_plot.xml	Tue May 21 13:45:07 2024 +0000
+++ b/dimet_enrichment_plot.xml	Fri Jun 21 18:51:03 2024 +0000
@@ -15,8 +15,7 @@
     @INIT_TIMEPOINTS@
     @INIT_ENRICHMENT_METABOLITES@
     HYDRA_FULL_ERROR=1 python -m dimet
-        -cp '$__new_file_path__/config'
-        '++hydra.run.dir=mean_enrichment_line_plot'
+        '++hydra.run.dir=.'
         '++figure_path=figures'
         '++table_path=tables'
         '++analysis={
@@ -242,4 +241,4 @@
  ]]>
     </help>
     <expand macro="citations"/>
-</tool>
\ No newline at end of file
+</tool>
--- a/macros.xml	Tue May 21 13:45:07 2024 +0000
+++ b/macros.xml	Fri Jun 21 18:51:03 2024 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">0.2.4</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@VERSION_SUFFIX@">3</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">dimet</requirement>
@@ -598,16 +598,15 @@
 
     ]]></token>
     <token name="@INIT_CONFIG@"><![CDATA[
-    mkdir -p '$__new_file_path__/config' &&
-    touch '$__new_file_path__/config/config.yaml' &&
+    mkdir -p 'config' &&
+    touch 'config/config.yaml' &&
     ]]></token>
     <token name="@REMOVE_CONFIG@"><![CDATA[
-    && rm -r '$__new_file_path__/config'
+    && rm -r 'config'
     ]]></token>
     <token name="@INIT_ABUNDANCE_PLOT@"><![CDATA[
 
     mkdir -p data &&
-
     #if $metadata_path:
         ln -s '$metadata_path' data/metadata.csv &&
     #end if