Mercurial > repos > iuc > dimet_isotopologues_plot

changeset 5:89ca62980a2e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit b74312f0a6cb28e204f8633453e493fa0b2c89d8
author iuc
date Tue, 21 May 2024 13:41:17 +0000
parents 16c64719226c
children a7d1d77e7cc3
files dimet_isotopologues_plot.xml macros.xml
diffstat 2 files changed, 9 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/dimet_isotopologues_plot.xml	Wed Mar 27 16:50:32 2024 +0000
+++ b/dimet_isotopologues_plot.xml	Tue May 21 13:41:17 2024 +0000
@@ -84,7 +84,7 @@
                    help="Default value is 3.0."/>
             <param name="inner_numbers_size" type="integer" min="1" max="20" value="13" label="inner number size"
                    help="Default value is 13."/>
-            <param name="max_nb_carbons_possible" type="integer" min="1" max="20" value="12" label="max number carbons possible"
+            <param name="max_nb_carbons_possible" type="integer" min="1" max="30" value="12" label="max number carbons possible"
                    help="Default value is 12."/>
         </section>
     </inputs>
--- a/macros.xml	Wed Mar 27 16:50:32 2024 +0000
+++ b/macros.xml	Tue May 21 13:41:17 2024 +0000
@@ -1,7 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">0.2.4</token>
-    <token name="@VERSION_SUFFIX@">1</token>
-    <token name="@EXECUTABLE@">pca</token>
+    <token name="@VERSION_SUFFIX@">2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">dimet</requirement>
@@ -490,7 +489,7 @@
                     </valid>
                 </sanitizer>
             </param>
-            <repeat name="factor_list" title="Conditions" default="2" min="2" max="2" help="Specify conditions to compare from metadata file (for each comparison, the first specified condition is the reference). You have to load a metadata file prior to have access to condition list">
+            <repeat name="factor_list" title="Conditions" default="2" min="2" max="2" help="Specify conditions to compare from metadata file (for each comparison, the last specified condition is the reference). You have to load a metadata file prior to have access to condition list">
                 <param name="condition" label="Condition" type="select" optional="false" multiple="false">
                     <options from_dataset="metadata_path">
                         <column name="condition" index="1"/>
@@ -552,7 +551,7 @@
         </repeat>
     </xml>
     <xml name="factor_list">
-        <repeat name="factor_list" title="Conditions" min="2" max="2" help="Specify conditions to compare from metadata file (for each comparison, the first specified condition is the reference). You have to load a metadata file prior to have access to condition list">
+        <repeat name="factor_list" title="Conditions" min="2" max="2" help="Specify conditions to be taken into account from metadata file (for each comparison, the last specified condition is the reference). You have to load a metadata file prior to have access to condition list">
             <param name="condition" label="Condition" type="select" optional="false" multiple="false">
                 <options from_dataset="metadata_path">
                     <column name="condition" index="1"/>
@@ -615,6 +614,11 @@
     #if $abundance_file:
         ln -s '$abundance_file' data/abundance.csv &&
     #end if
+    #set $axisx = "condition"
+    #if str( $output_options.bar_color ) == "condition":
+        #set $axisx = "timepoint"
+    #end if
+
     ]]></token>
     <token name="@INIT_ENRICHMENT_PLOT@"><![CDATA[