view test-data/ranked-h-gene-sets-IL13Ant-IL13_batch.txt @ 0:a8a083193440 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
author iuc
date Thu, 25 Jan 2018 02:23:23 -0500
parents
children
line wrap: on
line source

Rank	ID	GeneSet	BroadUrl	Description	PubMedID	NumGenes	Contributor	p.value	p.adj	vote.rank	avg.rank	med.rank	min.pvalue	min.rank	avg.logfc	avg.logfc.dir	direction	significance	camera	globaltest	ora
1	M5928	HALLMARK_MYC_TARGETS_V2	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_MYC_TARGETS_V2.html	A subgroup of genes regulated by MYC - version 2 (v2).		53/58	Arthur Liberzon	6.74284874774357e-08	1.12380812462393e-06	5	14.6666666666667	3	2.24761629976564e-08	3	0.359329542834304	-0.36180948485806	-1	5.6036400577191	3	3	38
2	M5932	HALLMARK_INFLAMMATORY_RESPONSE	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_INFLAMMATORY_RESPONSE.html	Genes defining inflammatory response.		175/200	Arthur Liberzon	1.06165133122067e-07	1.32706416402584e-06	5	6	4	3.5388378959693e-08	2	2.30703143698757	2.37290331728617	1	35.6474882896303	4	12	2
3	M5944	HALLMARK_ANGIOGENESIS	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_ANGIOGENESIS.html	Genes up-regulated during formation of blood vessels (angiogenesis).		24/36	Arthur Liberzon	0.0987135364567957	0.224348946492718	30	13.3333333333333	8	0.034050809631757	4	3.55096745337827	3.55096745337827	1	6.04317533929437	28	4	8
4	M5895	HALLMARK_WNT_BETA_CATENIN_SIGNALING	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_WNT_BETA_CATENIN_SIGNALING.html	Genes up-regulated by activation of WNT signaling through accumulation of beta catenin CTNNB1 [GeneID=1499].		35/42	Arthur Liberzon	0.035593452533085	0.104686625097309	15	8.66666666666667	9	0.0120081015122172	2	2.93272326169216	-2.93272326169216	-1	7.54140790688487	15	2	9
5	M5953	HALLMARK_KRAS_SIGNALING_UP	http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_KRAS_SIGNALING_UP.html	Genes up-regulated by KRAS activation.		155/200	Arthur Liberzon	0.00020119611514047	0.00111775619522483	10	11.3333333333333	9	6.70698699803809e-05	1	3.44648124390937	-3.40209324332434	-1	26.7406537848717	9	24	1