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annotate test-data/ranked-h-gene-sets-IL13Ant-IL13_batch.txt @ 0:a8a083193440 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
author iuc
date Thu, 25 Jan 2018 02:23:23 -0500
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a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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1 Rank ID GeneSet BroadUrl Description PubMedID NumGenes Contributor p.value p.adj vote.rank avg.rank med.rank min.pvalue min.rank avg.logfc avg.logfc.dir direction significance camera globaltest ora
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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2 1 M5928 HALLMARK_MYC_TARGETS_V2 http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_MYC_TARGETS_V2.html A subgroup of genes regulated by MYC - version 2 (v2). 53/58 Arthur Liberzon 6.74284874774357e-08 1.12380812462393e-06 5 14.6666666666667 3 2.24761629976564e-08 3 0.359329542834304 -0.36180948485806 -1 5.6036400577191 3 3 38
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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3 2 M5932 HALLMARK_INFLAMMATORY_RESPONSE http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_INFLAMMATORY_RESPONSE.html Genes defining inflammatory response. 175/200 Arthur Liberzon 1.06165133122067e-07 1.32706416402584e-06 5 6 4 3.5388378959693e-08 2 2.30703143698757 2.37290331728617 1 35.6474882896303 4 12 2
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
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4 3 M5944 HALLMARK_ANGIOGENESIS http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_ANGIOGENESIS.html Genes up-regulated during formation of blood vessels (angiogenesis). 24/36 Arthur Liberzon 0.0987135364567957 0.224348946492718 30 13.3333333333333 8 0.034050809631757 4 3.55096745337827 3.55096745337827 1 6.04317533929437 28 4 8
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
iuc
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5 4 M5895 HALLMARK_WNT_BETA_CATENIN_SIGNALING http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_WNT_BETA_CATENIN_SIGNALING.html Genes up-regulated by activation of WNT signaling through accumulation of beta catenin CTNNB1 [GeneID=1499]. 35/42 Arthur Liberzon 0.035593452533085 0.104686625097309 15 8.66666666666667 9 0.0120081015122172 2 2.93272326169216 -2.93272326169216 -1 7.54140790688487 15 2 9
a8a083193440 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/egsea commit 7d0c7d850cd56ea3e54d8c03266f719241b20b8b
iuc
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6 5 M5953 HALLMARK_KRAS_SIGNALING_UP http://www.broadinstitute.org/gsea/msigdb/cards/HALLMARK_KRAS_SIGNALING_UP.html Genes up-regulated by KRAS activation. 155/200 Arthur Liberzon 0.00020119611514047 0.00111775619522483 10 11.3333333333333 9 6.70698699803809e-05 1 3.44648124390937 -3.40209324332434 -1 26.7406537848717 9 24 1