Mercurial > repos > iuc > ena_upload
diff README.rst @ 10:480d9e9d156b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit dccd4c0668ec8ce1b1c8fd9cef4dcf3a99dc78b3
author | iuc |
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date | Fri, 27 Oct 2023 19:44:40 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Fri Oct 27 19:44:40 2023 +0000 @@ -0,0 +1,42 @@ +ENA-upload-cli wrapper +====================== + +Galaxy wrapper of the +`ena-upload-cli <https://github.com/usegalaxy-eu/ena-upload-cli>`__. +Templates that can be used in as input for the metadata can be found +`here <https://github.com/ELIXIR-Belgium/ENA-metadata-templates>`__ + +This tool is shipped in a ready to use Galaxy container found +`here <https://github.com/ELIXIR-Belgium/ena-upload-container>`__. + +Setting up credentials on Galaxy +-------------------------------- + +The admin of the server can set up global credentials through a file +with the format: + +.. code-block:: yaml + + username: webin_id + password: webin_password + +The path to this file must be exported as an environment variable called +$GALAXY_ENA_SECRETS + +Alternatively, the admin can enable users to set their own credentials +for this tool. To enable it, make sure the file +``config/user_preferences_extra_conf.yml`` has the following section: + +.. code-block:: yaml + + ena_webin_account: + description: Your ENA Webin account details + inputs: + - name: webin_id + label: ENA Webin ID + type: text + required: False + - name: password + label: Password + type: password + required: False