Mercurial > repos > iuc > ena_upload

annotate README.rst @ 10:480d9e9d156b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit dccd4c0668ec8ce1b1c8fd9cef4dcf3a99dc78b3
author iuc
date Fri, 27 Oct 2023 19:44:40 +0000
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1 ENA-upload-cli wrapper
480d9e9d156b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit dccd4c0668ec8ce1b1c8fd9cef4dcf3a99dc78b3
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2 ======================
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3
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4 Galaxy wrapper of the
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5 `ena-upload-cli <https://github.com/usegalaxy-eu/ena-upload-cli>`__.
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6 Templates that can be used in as input for the metadata can be found
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7 `here <https://github.com/ELIXIR-Belgium/ENA-metadata-templates>`__
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8
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9 This tool is shipped in a ready to use Galaxy container found
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10 `here <https://github.com/ELIXIR-Belgium/ena-upload-container>`__.
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12 Setting up credentials on Galaxy
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13 --------------------------------
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15 The admin of the server can set up global credentials through a file
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16 with the format:
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18 .. code-block:: yaml
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20 username: webin_id
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21 password: webin_password
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23 The path to this file must be exported as an environment variable called
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24 $GALAXY_ENA_SECRETS
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25
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26 Alternatively, the admin can enable users to set their own credentials
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27 for this tool. To enable it, make sure the file
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28 ``config/user_preferences_extra_conf.yml`` has the following section:
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30 .. code-block:: yaml
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31
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32 ena_webin_account:
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33 description: Your ENA Webin account details
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34 inputs:
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35 - name: webin_id
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36 label: ENA Webin ID
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37 type: text
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38 required: False
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39 - name: password
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40 label: Password
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41 type: password
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42 required: False