Mercurial > repos > iuc > ena_webin_cli

annotate test-data/receipt_sample_phiX3.txt @ 1:93fac0ae859f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
author iuc
date Mon, 06 Oct 2025 12:13:19 +0000
parents
children 361a6693aa25
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93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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1 YAML -------------
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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2 ENA_experiment:
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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3 0:
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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4 alias: exp_test_alias_001
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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5 design_description: Lot's of coffe and magic
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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6 insert_size: 250.0
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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7 instrument_model: NextSeq 500
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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8 library_construction_protocol: Illumina COVIDSeq Test Kit
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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9 library_layout: PAIRED
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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10 library_name: Cov51
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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11 library_selection: RT-PCR
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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12 library_source: VIRAL RNA
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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13 library_strategy: AMPLICON
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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14 platform: ILLUMINA
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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15 sample_alias: phiX2
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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16 study_alias: study_alias_001
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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17 title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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18 1:
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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19 alias: exp_test_alias_002
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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20 design_description: Lot's of coffe and magic
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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21 insert_size: 250.0
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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22 instrument_model: NextSeq 500
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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23 library_construction_protocol: Illumina COVIDSeq Test Kit
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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24 library_layout: PAIRED
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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25 library_name: Cov51
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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26 library_selection: RT-PCR
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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27 library_source: VIRAL RNA
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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28 library_strategy: AMPLICON
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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29 platform: ILLUMINA
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30 sample_alias: phiX3
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iuc
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31 study_alias: study_alias_001
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
iuc
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32 title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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33 ENA_run:
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34 2:
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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35 alias: run_alias_001
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36 experiment_alias: exp_test_alias_001
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37 file_format: FASTQ
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38 file_name: run001.fastq.gz
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39 ENA_sample:
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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40 2:
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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41 alias: phiX2
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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42 collecting institution: Umbrella Corp.
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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43 collection date: '2021-05-03'
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44 collector name: "John Doe"
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45 definition for seropositive sample: ''
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46 2:
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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47 alias: phiX3
93fac0ae859f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
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48 collecting institution: Umbrella Corp.
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49 collection date: '2021-05-03'
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50 collector name: "John Doe"
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51 definition for seropositive sample: ''
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52 ENA_study:
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53 2:
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54 alias: study_alias_001
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55 study_abstract: "Help"
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56 study_type: Whole Genome Sequencing
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57 title: Whole genome sequencing of SARS-CoV-2
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58 YAML -------------
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59
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60 Printing receipt to ./receipt.xml
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61
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62 Submission was done successfully
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63
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64 Study accession details:
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65 study_alias_001 FAKE0001 2011-01-16T10:52:06.497+01:00 added
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66
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67 Sample accession details:
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68 phiX2 FAKESAMP001 2011-01-16T10:52:06.497+01:00 added
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69 phiX3 FAKESAMP002 2011-01-16T10:52:06.497+01:00 added
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70
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71 Saving updates in new tsv tables::
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72 save updates in ./submission_files/studies_updated.tsv
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73 save updates in ./submission_files/samples_updated.tsv
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74 save updates in ./submission_files/experiments_updated.tsv
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75 save updates in ./submission_files/runs_updated.tsv
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76 action_option add