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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit 35b4a063e227ea4a2440e23c4df5c27e42c077cb
author iuc
date Tue, 05 Aug 2025 11:53:57 +0000
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1 Webin CLI wrapper
2 ======================
3 the submission of genome assemblies using the
4 [Webin-cli](https://github.com/enasequence/webin-cli)
5
6 This is a Galaxy wrapper for `webin cli <https://github.com/enasequence/webin-cli>`__ tool from `ENA <https://www.ebi.ac.uk/ena/browser/home>`__.
7
8
9 Setting up credentials on Galaxy
10 --------------------------------
11
12 The admin of the server can set up global credentials through a file
13 with the format:
14
15 .. code-block:: yaml
16
17 username: webin_id
18 password: webin_password
19
20 The path to this file must be exported as an environment variable called
21 $GALAXY_ENA_SECRETS
22
23 Alternatively, the admin can enable users to set their own credentials
24 for this tool. To enable it, make sure the file
25 ``config/user_preferences_extra_conf.yml`` has the following section:
26
27 .. code-block:: yaml
28
29 ena_webin_account:
30 description: Your ENA Webin account details
31 inputs:
32 - name: webin_id
33 label: ENA Webin ID
34 type: text
35 required: False
36 - name: password
37 label: Password
38 type: password
39 required: False