diff README.rst @ 0:c9f87770ba8f draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit 35b4a063e227ea4a2440e23c4df5c27e42c077cb
author iuc
date Tue, 05 Aug 2025 11:53:57 +0000
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+Webin CLI wrapper
+======================
+the submission of genome assemblies using the 
+[Webin-cli](https://github.com/enasequence/webin-cli)
+
+This is a Galaxy wrapper for `webin cli <https://github.com/enasequence/webin-cli>`__  tool from `ENA <https://www.ebi.ac.uk/ena/browser/home>`__.
+
+
+Setting up credentials on Galaxy
+--------------------------------
+
+The admin of the server can set up global credentials through a file
+with the format:
+
+.. code-block:: yaml
+
+   username: webin_id
+   password: webin_password
+
+The path to this file must be exported as an environment variable called
+$GALAXY_ENA_SECRETS
+
+Alternatively, the admin can enable users to set their own credentials
+for this tool. To enable it, make sure the file
+``config/user_preferences_extra_conf.yml`` has the following section:
+
+.. code-block:: yaml
+
+       ena_webin_account:
+           description: Your ENA Webin account details
+           inputs:
+               - name: webin_id
+                 label: ENA Webin ID
+                 type: text
+                 required: False
+               - name: password
+                 label: Password
+                 type:  password
+                 required: False