Mercurial > repos > iuc > enasearch_retrieve_analysis_report

annotate enasearch_retrieve_analysis_report.xml @ 2:1e25f66e4acc draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch commit a0adc28145cce02ecaed3a90156ed54c4385d1a0"
author iuc
date Tue, 21 Jan 2020 19:04:54 -0500
parents a5f787bfe69e
children
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186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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1 <tool id="enasearch_retrieve_analysis_report" name="Retrieve an analysis report" version="@WRAPPER_VERSION@.0">
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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2 <description></description>
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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3 <macros>
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4 <import>macros.xml</import>
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5 <import>search_macros.xml</import>
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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6 </macros>
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7 <expand macro="requirements"/>
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8 <expand macro="version"/>
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9 <command detect_errors="aggressive"><![CDATA[
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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10 enasearch
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11 retrieve_analysis_report
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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12 --accession '$accession'
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13 @FIELDS@
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14 --file '$output'
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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15 ]]></command>
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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16 <inputs>
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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17 <expand macro="accession"/>
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18 <param argument="--fields" type="select" optional="true" multiple="true" label="Fields to return">
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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19 <expand macro="analysis_fields"/>
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20 </param>
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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21 </inputs>
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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22 <outputs>
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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23 <data name="output" format="tabular" label="${tool.name} on ${accession}"/>
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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24 </outputs>
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25 <tests>
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26 <test>
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27 <param name="accession" value="ERZ009929"/>
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1e25f66e4acc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch commit a0adc28145cce02ecaed3a90156ed54c4385d1a0"
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28 <output name="output">
1e25f66e4acc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch commit a0adc28145cce02ecaed3a90156ed54c4385d1a0"
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29 <assert_contents>
1e25f66e4acc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch commit a0adc28145cce02ecaed3a90156ed54c4385d1a0"
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30 <has_n_lines n="2"/>
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31 <has_text text="ERZ009929"/>
1e25f66e4acc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch commit a0adc28145cce02ecaed3a90156ed54c4385d1a0"
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32 <has_text text="Solanum lycopersicum"/>
1e25f66e4acc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch commit a0adc28145cce02ecaed3a90156ed54c4385d1a0"
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33 <has_text text="256c09cc87e998c73a6b31ab34b562a4"/>
1e25f66e4acc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch commit a0adc28145cce02ecaed3a90156ed54c4385d1a0"
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34 </assert_contents>
1e25f66e4acc "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch commit a0adc28145cce02ecaed3a90156ed54c4385d1a0"
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35 </output>
0
186565dfa9e5 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
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36 </test>
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37 <test>
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38 <param name="accession" value="ERZ009929"/>
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39 <param name="fields" value="analysis_accession"/>
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40 <output name="output" md5="7249f93fac05d1e6746a076e1ae445b5"/>
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41 </test>
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42 <test>
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43 <param name="accession" value="ERZ009929"/>
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44 <param name="fields" value="analysis_accession,sample_accession,scientific_name"/>
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45 <output name="output" md5="af4ba9b125b27525979ab6ea6a2b3637"/>
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46 </test>
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47 </tests>
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48 <help><![CDATA[
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49 **What it does**
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50
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51 This tool retrieve an analysis report for an accession id
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52 ]]></help>
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53 <expand macro="citations"/>
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54 </tool>